Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 112578 | 0.66 | 0.999826 |
Target: 5'- -uGCAGCUGGCCagggUGGAGuucuccaccccgGCGAAGCg -3' miRNA: 3'- acUGUCGGCUGGaa--GCUUU------------UGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 53896 | 0.66 | 0.999826 |
Target: 5'- gGGCGGCUGGCUUUUGuGAACa---- -3' miRNA: 3'- aCUGUCGGCUGGAAGCuUUUGcuuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 74045 | 0.66 | 0.999826 |
Target: 5'- cGGCGGCUGACgCggCaGAGGCuGAAGCg -3' miRNA: 3'- aCUGUCGGCUG-GaaGcUUUUG-CUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 32016 | 0.66 | 0.999826 |
Target: 5'- gGACAGaggGGCC-UCG-GGACGAGGCg -3' miRNA: 3'- aCUGUCgg-CUGGaAGCuUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 34921 | 0.66 | 0.999821 |
Target: 5'- gGGCAGCgGACCggcagcggccCGGccaccccccgccgGAGCGggGCa -3' miRNA: 3'- aCUGUCGgCUGGaa--------GCU-------------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 53193 | 0.66 | 0.999776 |
Target: 5'- cGGCc-CCGGCCUUgGggGGCGGc-- -3' miRNA: 3'- aCUGucGGCUGGAAgCuuUUGCUuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 25421 | 0.66 | 0.999776 |
Target: 5'- gGACAcGCCgGACCU---GAAACGAGAg -3' miRNA: 3'- aCUGU-CGG-CUGGAagcUUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 44353 | 0.66 | 0.999776 |
Target: 5'- gUGACcGCgGGCCc-CGggGGCaGAGACa -3' miRNA: 3'- -ACUGuCGgCUGGaaGCuuUUG-CUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 120504 | 0.66 | 0.999776 |
Target: 5'- cUGGCGGCCGaggacgcgaGCCgcguggaugCGGcgGCGGGACu -3' miRNA: 3'- -ACUGUCGGC---------UGGaa-------GCUuuUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 146342 | 0.66 | 0.999771 |
Target: 5'- aGACugucgcuccucuuGGCCGGCCagaaGAGcGCGAAACc -3' miRNA: 3'- aCUG-------------UCGGCUGGaag-CUUuUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 43231 | 0.66 | 0.999715 |
Target: 5'- -uGCAGCgGACCUUUGggGugccuCGgcGCc -3' miRNA: 3'- acUGUCGgCUGGAAGCuuUu----GCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 116872 | 0.66 | 0.999715 |
Target: 5'- cGACauGGCCGcCCUcCGGAGGCGccACc -3' miRNA: 3'- aCUG--UCGGCuGGAaGCUUUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 149563 | 0.66 | 0.999715 |
Target: 5'- cGGCAGCC--CCUcCGAGAAUGAc-- -3' miRNA: 3'- aCUGUCGGcuGGAaGCUUUUGCUuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 69588 | 0.66 | 0.999715 |
Target: 5'- aGAUGGCCaGGuCCUggGgcAGCGAGACg -3' miRNA: 3'- aCUGUCGG-CU-GGAagCuuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 122956 | 0.66 | 0.999715 |
Target: 5'- -cGCAGCUccuGACCaagaGGGAGCGGGACg -3' miRNA: 3'- acUGUCGG---CUGGaag-CUUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 147957 | 0.66 | 0.999715 |
Target: 5'- -aGCAGCCGGCCUUCauucccuGGAUGGu-- -3' miRNA: 3'- acUGUCGGCUGGAAGcu-----UUUGCUuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 157845 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 145534 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 142456 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 112055 | 0.67 | 0.999639 |
Target: 5'- gGGCuGCCGGCCUU-GAcgGCGcaguuGACg -3' miRNA: 3'- aCUGuCGGCUGGAAgCUuuUGCu----UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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