miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28895 5' -44.2 NC_006146.1 + 163746 0.66 0.999999
Target:  5'- -uUGUGGgguccuGGCGGguGUAGUAuggauGUUGg -3'
miRNA:   3'- auACAUU------UCGCCguCAUCAUu----CAAUg -5'
28895 5' -44.2 NC_006146.1 + 52785 0.66 0.999999
Target:  5'- ----cGAAGCGGCcgaacuugcAGUGGgacuGGUUGCa -3'
miRNA:   3'- auacaUUUCGCCG---------UCAUCau--UCAAUG- -5'
28895 5' -44.2 NC_006146.1 + 41469 0.66 0.999999
Target:  5'- gGUGgc-AGCGGCGGUGau--GUUGCu -3'
miRNA:   3'- aUACauuUCGCCGUCAUcauuCAAUG- -5'
28895 5' -44.2 NC_006146.1 + 78074 0.66 0.999999
Target:  5'- aGUGcucGAAGUGGguGUGGUGgaGGaUUGCg -3'
miRNA:   3'- aUACa--UUUCGCCguCAUCAU--UC-AAUG- -5'
28895 5' -44.2 NC_006146.1 + 140916 0.66 0.999999
Target:  5'- cUAUGUAGAcccuucGaCGGCAgGUGGU-GGUUACu -3'
miRNA:   3'- -AUACAUUU------C-GCCGU-CAUCAuUCAAUG- -5'
28895 5' -44.2 NC_006146.1 + 12406 0.66 0.999999
Target:  5'- --cGUGGAcGCGGCGGUGGacgccgAGGUg-- -3'
miRNA:   3'- auaCAUUU-CGCCGUCAUCa-----UUCAaug -5'
28895 5' -44.2 NC_006146.1 + 86427 0.66 0.999997
Target:  5'- aUcgGUAGGGgGGCAGcUGGgcuugAAGggGCa -3'
miRNA:   3'- -AuaCAUUUCgCCGUC-AUCa----UUCaaUG- -5'
28895 5' -44.2 NC_006146.1 + 40071 0.66 0.999997
Target:  5'- cAUGU-GGGCGGCGG-GGUGGGg--- -3'
miRNA:   3'- aUACAuUUCGCCGUCaUCAUUCaaug -5'
28895 5' -44.2 NC_006146.1 + 97320 0.69 0.999936
Target:  5'- cUGUGgu-GGUGGCGGUGGUGAa---- -3'
miRNA:   3'- -AUACauuUCGCCGUCAUCAUUcaaug -5'
28895 5' -44.2 NC_006146.1 + 112951 0.69 0.999936
Target:  5'- --cGU--AGUGGCAGUGGUGA--UGCa -3'
miRNA:   3'- auaCAuuUCGCCGUCAUCAUUcaAUG- -5'
28895 5' -44.2 NC_006146.1 + 139176 0.69 0.999886
Target:  5'- -cUGUGAGGCGGCuGUuguuGUcaAAGggGCg -3'
miRNA:   3'- auACAUUUCGCCGuCAu---CA--UUCaaUG- -5'
28895 5' -44.2 NC_006146.1 + 110861 0.72 0.998129
Target:  5'- ----aGGAGCGGCugcugaacGUGGUAAGUUAUg -3'
miRNA:   3'- auacaUUUCGCCGu-------CAUCAUUCAAUG- -5'
28895 5' -44.2 NC_006146.1 + 144489 0.72 0.99728
Target:  5'- -uUGUAAAuGCGaGCAGUAGUAGGc--- -3'
miRNA:   3'- auACAUUU-CGC-CGUCAUCAUUCaaug -5'
28895 5' -44.2 NC_006146.1 + 35879 0.78 0.92996
Target:  5'- -uUGUGGAGUGGgGGUGGUGGGgugACg -3'
miRNA:   3'- auACAUUUCGCCgUCAUCAUUCaa-UG- -5'
28895 5' -44.2 NC_006146.1 + 26445 1.11 0.030502
Target:  5'- uUAUGUAAAGCGGCAGUAGUAAGUUACa -3'
miRNA:   3'- -AUACAUUUCGCCGUCAUCAUUCAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.