miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 3' -54.5 NC_006146.1 + 64267 0.74 0.536814
Target:  5'- --aGCCGGCcgcAGCAGGcGCUGCGGCa -3'
miRNA:   3'- cagUGGUUGu--UCGUCCaCGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 115652 0.67 0.909192
Target:  5'- -cCGCCAccCGGGCGGGggucaugguggaGCUGUAGCUg -3'
miRNA:   3'- caGUGGUu-GUUCGUCCa-----------CGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 61755 0.66 0.927823
Target:  5'- -gCAUCugauUggGCAGGUGCUGCugauGCc -3'
miRNA:   3'- caGUGGuu--GuuCGUCCACGACGu---CGa -5'
28896 3' -54.5 NC_006146.1 + 59640 0.66 0.933117
Target:  5'- gGUCACCAACAAGgAGGaagcGCUcaGGCc -3'
miRNA:   3'- -CAGUGGUUGUUCgUCCa---CGAcgUCGa -5'
28896 3' -54.5 NC_006146.1 + 41704 0.69 0.79235
Target:  5'- cUCACCGGCGGG-GGGUGCgGC-GCUg -3'
miRNA:   3'- cAGUGGUUGUUCgUCCACGaCGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 58941 0.69 0.810681
Target:  5'- --gGCCAAUcuGUgcgcugAGGUGCUGCAGCc -3'
miRNA:   3'- cagUGGUUGuuCG------UCCACGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 99813 0.69 0.828329
Target:  5'- -gCACCGGCGAGgGGGUGUUcGgGGCc -3'
miRNA:   3'- caGUGGUUGUUCgUCCACGA-CgUCGa -5'
28896 3' -54.5 NC_006146.1 + 142307 0.68 0.836875
Target:  5'- uUCuCCAcaGGGCAGGUGUgaaGCGGCUg -3'
miRNA:   3'- cAGuGGUugUUCGUCCACGa--CGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 60809 0.67 0.883776
Target:  5'- --gGCCAACAacuacauaAGCAGGgacgaGCUGCuGCa -3'
miRNA:   3'- cagUGGUUGU--------UCGUCCa----CGACGuCGa -5'
28896 3' -54.5 NC_006146.1 + 64667 0.67 0.904134
Target:  5'- cGUCGCCGu--GGUAGGUGgucucCUGUAGCc -3'
miRNA:   3'- -CAGUGGUuguUCGUCCAC-----GACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 10976 0.67 0.89759
Target:  5'- aGUCACCua-AAGCAGGcggcGCUGcCGGUg -3'
miRNA:   3'- -CAGUGGuugUUCGUCCa---CGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 151387 0.68 0.869022
Target:  5'- aGUC-CCGcugcuGCAGGCGGGggaugGCgcggcgGCAGCUg -3'
miRNA:   3'- -CAGuGGU-----UGUUCGUCCa----CGa-----CGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 72557 0.72 0.629319
Target:  5'- -cCGCCAAUggGCGccggcguGGUGCUGgGGCUu -3'
miRNA:   3'- caGUGGUUGuuCGU-------CCACGACgUCGA- -5'
28896 3' -54.5 NC_006146.1 + 39759 0.67 0.904134
Target:  5'- gGUguCCAGCAgaucgcagacgcGGCAGGUGCUG--GCUg -3'
miRNA:   3'- -CAguGGUUGU------------UCGUCCACGACguCGA- -5'
28896 3' -54.5 NC_006146.1 + 146014 0.71 0.682746
Target:  5'- -cCACCGAgGGGCAGG-GggGCAGCUc -3'
miRNA:   3'- caGUGGUUgUUCGUCCaCgaCGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 154668 0.68 0.861305
Target:  5'- -gCACCGugGuGGCGGGgggcGCUGCuGCUg -3'
miRNA:   3'- caGUGGUugU-UCGUCCa---CGACGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 142537 0.67 0.904134
Target:  5'- --aACCAugGAGguGGuUGCggUGCAGCc -3'
miRNA:   3'- cagUGGUugUUCguCC-ACG--ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 166654 0.66 0.91648
Target:  5'- -aCGCCAgaGCGAGCGGGaagggGgaGCGGUg -3'
miRNA:   3'- caGUGGU--UGUUCGUCCa----CgaCGUCGa -5'
28896 3' -54.5 NC_006146.1 + 59909 0.7 0.773411
Target:  5'- --gGCCAACcuGCuGGUGC-GCGGCUa -3'
miRNA:   3'- cagUGGUUGuuCGuCCACGaCGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 65469 0.69 0.810681
Target:  5'- -aCGCUGGCGGGCugugcGGGUGCUG-AGCUg -3'
miRNA:   3'- caGUGGUUGUUCG-----UCCACGACgUCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.