miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 3' -54.5 NC_006146.1 + 107385 0.67 0.890803
Target:  5'- aGUCAgaaaAGCGuAGCAGGguccaggGCUGCGGCg -3'
miRNA:   3'- -CAGUgg--UUGU-UCGUCCa------CGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 109533 0.67 0.890803
Target:  5'- cUCACaGAC-AGCAGGUugacCUGCAGCa -3'
miRNA:   3'- cAGUGgUUGuUCGUCCAc---GACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 60809 0.67 0.883776
Target:  5'- --gGCCAACAacuacauaAGCAGGgacgaGCUGCuGCa -3'
miRNA:   3'- cagUGGUUGU--------UCGUCCa----CGACGuCGa -5'
28896 3' -54.5 NC_006146.1 + 151387 0.68 0.869022
Target:  5'- aGUC-CCGcugcuGCAGGCGGGggaugGCgcggcgGCAGCUg -3'
miRNA:   3'- -CAGuGGU-----UGUUCGUCCa----CGa-----CGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 10870 0.68 0.861305
Target:  5'- aUCACCGugGAGCcGG-GCUuCAGCa -3'
miRNA:   3'- cAGUGGUugUUCGuCCaCGAcGUCGa -5'
28896 3' -54.5 NC_006146.1 + 154668 0.68 0.861305
Target:  5'- -gCACCGugGuGGCGGGgggcGCUGCuGCUg -3'
miRNA:   3'- caGUGGUugU-UCGUCCa---CGACGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 10389 0.68 0.853371
Target:  5'- gGUCGCgGcuCAGGguGGUGCUGU-GCUa -3'
miRNA:   3'- -CAGUGgUu-GUUCguCCACGACGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 88158 0.68 0.845225
Target:  5'- uUCACgagguguagaUAACAauGGCA-GUGCUGCAGCUg -3'
miRNA:   3'- cAGUG----------GUUGU--UCGUcCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 38891 0.68 0.840239
Target:  5'- uGUCACCGcCccuGCAGGUGCagaagucaacacaccUGCAGUg -3'
miRNA:   3'- -CAGUGGUuGuu-CGUCCACG---------------ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 142307 0.68 0.836875
Target:  5'- uUCuCCAcaGGGCAGGUGUgaaGCGGCUg -3'
miRNA:   3'- cAGuGGUugUUCGUCCACGa--CGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 99813 0.69 0.828329
Target:  5'- -gCACCGGCGAGgGGGUGUUcGgGGCc -3'
miRNA:   3'- caGUGGUUGUUCgUCCACGA-CgUCGa -5'
28896 3' -54.5 NC_006146.1 + 114469 0.69 0.819595
Target:  5'- --gGCCc---AGCAGGUGCUGguGCg -3'
miRNA:   3'- cagUGGuuguUCGUCCACGACguCGa -5'
28896 3' -54.5 NC_006146.1 + 65469 0.69 0.810681
Target:  5'- -aCGCUGGCGGGCugugcGGGUGCUG-AGCUg -3'
miRNA:   3'- caGUGGUUGUUCG-----UCCACGACgUCGA- -5'
28896 3' -54.5 NC_006146.1 + 58941 0.69 0.810681
Target:  5'- --gGCCAAUcuGUgcgcugAGGUGCUGCAGCc -3'
miRNA:   3'- cagUGGUUGuuCG------UCCACGACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 130495 0.69 0.800679
Target:  5'- cUCACCAugAuuaacuaGGUcuaGGGUGCUGuCAGCa -3'
miRNA:   3'- cAGUGGUugU-------UCG---UCCACGAC-GUCGa -5'
28896 3' -54.5 NC_006146.1 + 41704 0.69 0.79235
Target:  5'- cUCACCGGCGGG-GGGUGCgGC-GCUg -3'
miRNA:   3'- cAGUGGUUGUUCgUCCACGaCGuCGA- -5'
28896 3' -54.5 NC_006146.1 + 59909 0.7 0.773411
Target:  5'- --gGCCAACcuGCuGGUGC-GCGGCUa -3'
miRNA:   3'- cagUGGUUGuuCGuCCACGaCGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 159918 0.7 0.763736
Target:  5'- cGUCACCGGCAGcGCcgccugcuuuAGGUGCacUGUGGCa -3'
miRNA:   3'- -CAGUGGUUGUU-CG----------UCCACG--ACGUCGa -5'
28896 3' -54.5 NC_006146.1 + 40075 0.71 0.734015
Target:  5'- cGUCucCCGGCGgagggccugcAGCGcGUGCUGCAGCUc -3'
miRNA:   3'- -CAGu-GGUUGU----------UCGUcCACGACGUCGA- -5'
28896 3' -54.5 NC_006146.1 + 146014 0.71 0.682746
Target:  5'- -cCACCGAgGGGCAGG-GggGCAGCUc -3'
miRNA:   3'- caGUGGUUgUUCGUCCaCgaCGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.