miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28896 5' -64.3 NC_006146.1 + 119936 0.66 0.569267
Target:  5'- uGGcAGCgGCgCUgCUGCCggaggUCUCGGUGGg -3'
miRNA:   3'- -CC-UCGaCGgGGgGACGG-----GGAGCCACC- -5'
28896 5' -64.3 NC_006146.1 + 84445 0.66 0.559858
Target:  5'- -aGGCUGCCCCCucaaagcccagCUGCCCCUUc---- -3'
miRNA:   3'- ccUCGACGGGGG-----------GACGGGGAGccacc -5'
28896 5' -64.3 NC_006146.1 + 125597 0.67 0.550492
Target:  5'- aGGAGCUGUUCUCCgGCUuuccaCCgagGGUGGg -3'
miRNA:   3'- -CCUCGACGGGGGGaCGG-----GGag-CCACC- -5'
28896 5' -64.3 NC_006146.1 + 130478 0.67 0.541175
Target:  5'- gGGGccGCUGCCgCCCCggguggcuacuuUGCCCCcgCGGgaGGc -3'
miRNA:   3'- -CCU--CGACGG-GGGG------------ACGGGGa-GCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 4168 0.67 0.541175
Target:  5'- -cGGCUcGgCCUCCUGCCCCgagacgggcUCGGcGGg -3'
miRNA:   3'- ccUCGA-CgGGGGGACGGGG---------AGCCaCC- -5'
28896 5' -64.3 NC_006146.1 + 88510 0.67 0.531912
Target:  5'- uGGGGCUGUauCUCCCUGUaaCCCggGuGUGGa -3'
miRNA:   3'- -CCUCGACG--GGGGGACG--GGGagC-CACC- -5'
28896 5' -64.3 NC_006146.1 + 113104 0.67 0.530989
Target:  5'- aGGAGCUcgcGCUCCCCgggggaUGCCaugucuuCCgcCGGUGGg -3'
miRNA:   3'- -CCUCGA---CGGGGGG------ACGG-------GGa-GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 84812 0.67 0.522706
Target:  5'- uGAGCUcgagaGCCCCCCugccuagacaUGCCCCUUGa--- -3'
miRNA:   3'- cCUCGA-----CGGGGGG----------ACGGGGAGCcacc -5'
28896 5' -64.3 NC_006146.1 + 66677 0.67 0.522706
Target:  5'- gGGGGCgggGCaCCuCCCUGaaCCCUCGGcuugcggccccgUGGg -3'
miRNA:   3'- -CCUCGa--CG-GG-GGGACg-GGGAGCC------------ACC- -5'
28896 5' -64.3 NC_006146.1 + 45844 0.67 0.522706
Target:  5'- cGGGGauggcGUCCCCCgaGCCCCUuuugggacCGGUGa -3'
miRNA:   3'- -CCUCga---CGGGGGGa-CGGGGA--------GCCACc -5'
28896 5' -64.3 NC_006146.1 + 95708 0.67 0.519956
Target:  5'- cGGuGCUGCCUCCCagggccuaacaaaaUGCCCagUGGgggGGg -3'
miRNA:   3'- -CCuCGACGGGGGG--------------ACGGGgaGCCa--CC- -5'
28896 5' -64.3 NC_006146.1 + 6653 0.67 0.513563
Target:  5'- gGGAGgUGgCCCaCCagGCCCCacugaUGGUGGu -3'
miRNA:   3'- -CCUCgACgGGG-GGa-CGGGGa----GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 50536 0.67 0.513563
Target:  5'- aGGAGCcGCUCCag-GUCCCg-GGUGGg -3'
miRNA:   3'- -CCUCGaCGGGGggaCGGGGagCCACC- -5'
28896 5' -64.3 NC_006146.1 + 78830 0.67 0.513563
Target:  5'- cGGGCcGCCCCCCgcagcaGCCCCa-GGccGGg -3'
miRNA:   3'- cCUCGaCGGGGGGa-----CGGGGagCCa-CC- -5'
28896 5' -64.3 NC_006146.1 + 104421 0.67 0.504485
Target:  5'- -cAGCaccaGCCuCCCCaUGCCCCacaUGGUGGg -3'
miRNA:   3'- ccUCGa---CGG-GGGG-ACGGGGa--GCCACC- -5'
28896 5' -64.3 NC_006146.1 + 72660 0.67 0.501776
Target:  5'- uGGAcguGCUGUCCgCCCUGCaCCC-CGGcuacgccaugccccUGGa -3'
miRNA:   3'- -CCU---CGACGGG-GGGACG-GGGaGCC--------------ACC- -5'
28896 5' -64.3 NC_006146.1 + 119055 0.67 0.498172
Target:  5'- cGGGCUcgggccaggccccgaGCCCCCCUccacgccGCCCCggggaacgGGUGGc -3'
miRNA:   3'- cCUCGA---------------CGGGGGGA-------CGGGGag------CCACC- -5'
28896 5' -64.3 NC_006146.1 + 142106 0.67 0.495478
Target:  5'- uGGGCUGCCCcaagugagCCCUcgGCCCCagGGUa- -3'
miRNA:   3'- cCUCGACGGG--------GGGA--CGGGGagCCAcc -5'
28896 5' -64.3 NC_006146.1 + 3833 0.67 0.495478
Target:  5'- cGGGGCa-CCCCCgCUGCCCUacCGGaccUGGg -3'
miRNA:   3'- -CCUCGacGGGGG-GACGGGGa-GCC---ACC- -5'
28896 5' -64.3 NC_006146.1 + 103409 0.68 0.486544
Target:  5'- gGGGGCgucgUGCUCCCCUcGCUCCUggacCGG-GGc -3'
miRNA:   3'- -CCUCG----ACGGGGGGA-CGGGGA----GCCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.