miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 3' -59.5 NC_006146.1 + 127956 0.66 0.835959
Target:  5'- gGCCuCGUCGCGggaGUCCuCCGgaGCUUg -3'
miRNA:   3'- gCGGuGCAGCGCg--CAGGuGGC--UGAGa -5'
28897 3' -59.5 NC_006146.1 + 105449 0.66 0.827968
Target:  5'- cCGCCAgCGUgGuCGUGcCCACCucCUCUg -3'
miRNA:   3'- -GCGGU-GCAgC-GCGCaGGUGGcuGAGA- -5'
28897 3' -59.5 NC_006146.1 + 41960 0.66 0.8115
Target:  5'- cCGCCugGUCGUgaguGUGcUCUACUGcCUCg -3'
miRNA:   3'- -GCGGugCAGCG----CGC-AGGUGGCuGAGa -5'
28897 3' -59.5 NC_006146.1 + 128157 0.66 0.8115
Target:  5'- gGCCGCGUUGUGCGgcagcaCCGCCcggauccgcGGCUg- -3'
miRNA:   3'- gCGGUGCAGCGCGCa-----GGUGG---------CUGAga -5'
28897 3' -59.5 NC_006146.1 + 111922 0.66 0.8115
Target:  5'- gGCCAgGUUGCagGUGgCCACCGuCUCc -3'
miRNA:   3'- gCGGUgCAGCG--CGCaGGUGGCuGAGa -5'
28897 3' -59.5 NC_006146.1 + 151465 0.66 0.8115
Target:  5'- aGCgGCG-CGcCGCGUCCACguUGGCUUc -3'
miRNA:   3'- gCGgUGCaGC-GCGCAGGUG--GCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 107890 0.67 0.785697
Target:  5'- gGUUACGUCGgGCacCCGCCaGACUCc -3'
miRNA:   3'- gCGGUGCAGCgCGcaGGUGG-CUGAGa -5'
28897 3' -59.5 NC_006146.1 + 145478 0.67 0.767847
Target:  5'- gGCCcucuCGUUucagguccgGCGUGUCCACggaGACUCUg -3'
miRNA:   3'- gCGGu---GCAG---------CGCGCAGGUGg--CUGAGA- -5'
28897 3' -59.5 NC_006146.1 + 93588 0.68 0.721423
Target:  5'- aGCCugGgcaUGCGCGacCCGCCgGGCUCc -3'
miRNA:   3'- gCGGugCa--GCGCGCa-GGUGG-CUGAGa -5'
28897 3' -59.5 NC_006146.1 + 47795 0.68 0.711895
Target:  5'- aGCCcCGUCuaGCGcCCACCGccguCUCa -3'
miRNA:   3'- gCGGuGCAGcgCGCaGGUGGCu---GAGa -5'
28897 3' -59.5 NC_006146.1 + 33413 0.68 0.692659
Target:  5'- cCGCCugGgcacCGCuGCG-CCGCCG-CUCg -3'
miRNA:   3'- -GCGGugCa---GCG-CGCaGGUGGCuGAGa -5'
28897 3' -59.5 NC_006146.1 + 145824 0.68 0.682968
Target:  5'- gGaCCugGUgGCGC--CCGCCGGCUCc -3'
miRNA:   3'- gC-GGugCAgCGCGcaGGUGGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 142746 0.68 0.682968
Target:  5'- gGaCCugGUgGCGC--CCGCCGGCUCc -3'
miRNA:   3'- gC-GGugCAgCGCGcaGGUGGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 148902 0.68 0.682968
Target:  5'- gGaCCugGUgGCGC--CCGCCGGCUCc -3'
miRNA:   3'- gC-GGugCAgCGCGcaGGUGGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 151980 0.68 0.682968
Target:  5'- gGaCCugGUgGCGC--CCGCCGGCUCc -3'
miRNA:   3'- gC-GGugCAgCGCGcaGGUGGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 155058 0.68 0.682968
Target:  5'- gGaCCugGUgGCGC--CCGCCGGCUCc -3'
miRNA:   3'- gC-GGugCAgCGCGcaGGUGGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 158137 0.68 0.682968
Target:  5'- gGaCCugGUgGCGC--CCGCCGGCUCc -3'
miRNA:   3'- gC-GGugCAgCGCGcaGGUGGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 146891 0.69 0.66836
Target:  5'- aCGCCuCGccggucucgaguuccUCGCGCGUCCucuuucgcccccucuCCGGCUCc -3'
miRNA:   3'- -GCGGuGC---------------AGCGCGCAGGu--------------GGCUGAGa -5'
28897 3' -59.5 NC_006146.1 + 99218 0.7 0.604678
Target:  5'- gGCCGCGgccucggCGCGCccgaCCACCGuCUCg -3'
miRNA:   3'- gCGGUGCa------GCGCGca--GGUGGCuGAGa -5'
28897 3' -59.5 NC_006146.1 + 113488 0.71 0.527519
Target:  5'- gCGCCACGUagaggCGUGCGUCgGCCGGg--- -3'
miRNA:   3'- -GCGGUGCA-----GCGCGCAGgUGGCUgaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.