miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 92024 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92113 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92143 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92173 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92263 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 33339 0.7 0.603726
Target:  5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3'
miRNA:   3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5'
28897 5' -57.8 NC_006146.1 + 155763 0.69 0.664952
Target:  5'- cGAGGAGCUGUAGaCC----CCGCCGCa -3'
miRNA:   3'- -CUUCUUGACGUC-GGuaccGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 131078 0.69 0.675111
Target:  5'- ------gUGCGGCCGaGGCCGCCGg- -3'
miRNA:   3'- cuucuugACGUCGGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 33218 0.69 0.685236
Target:  5'- -uGGuGCUccgggGCAGCCggGUGGCCGCCGg- -3'
miRNA:   3'- cuUCuUGA-----CGUCGG--UACCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 117875 0.69 0.634348
Target:  5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3'
miRNA:   3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 39809 0.69 0.675111
Target:  5'- -uGGGACgGCGGCCGUugacggcccggcGGCCucgGCCGCa -3'
miRNA:   3'- cuUCUUGaCGUCGGUA------------CCGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 124833 0.69 0.654766
Target:  5'- cGAGGcccuGCaGCAGCUAUGGCacuCGCUGCg -3'
miRNA:   3'- -CUUCu---UGaCGUCGGUACCG---GCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 113505 0.69 0.685236
Target:  5'- -cAGGAg-GgGGCCAUGGCCGCCa-- -3'
miRNA:   3'- cuUCUUgaCgUCGGUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 94930 0.69 0.664952
Target:  5'- -cAGAcgaUGCAGgggaCGUGGCCGCUGCg -3'
miRNA:   3'- cuUCUug-ACGUCg---GUACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 44022 0.69 0.664952
Target:  5'- cGggGAGgggGCGGCCGagGGCC-CCGCUu -3'
miRNA:   3'- -CuuCUUga-CGUCGGUa-CCGGcGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 58956 0.69 0.663934
Target:  5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3'
miRNA:   3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 55926 0.69 0.634348
Target:  5'- --uGAugUccGCGGCCGUgGGCUGCUGCg -3'
miRNA:   3'- cuuCUugA--CGUCGGUA-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 76968 0.68 0.715312
Target:  5'- cGGAGAGC-GgAGCCcc-GCCGCCGCc -3'
miRNA:   3'- -CUUCUUGaCgUCGGuacCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 85822 0.68 0.715312
Target:  5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3'
miRNA:   3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 69276 0.68 0.705345
Target:  5'- --cGAACgGCGGCCGUuGCCaCCGCg -3'
miRNA:   3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.