Results 61 - 80 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 57396 | 0.68 | 0.735024 |
Target: 5'- -uAGAAUgGCGGCCAUGGCC-CC-CUc -3' miRNA: 3'- cuUCUUGaCGUCGGUACCGGcGGcGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 13450 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33105 | 0.68 | 0.705345 |
Target: 5'- -------gGCAGCCggGUGGCCGCCGg- -3' miRNA: 3'- cuucuugaCGUCGG--UACCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 76968 | 0.68 | 0.715312 |
Target: 5'- cGGAGAGC-GgAGCCcc-GCCGCCGCc -3' miRNA: 3'- -CUUCUUGaCgUCGGuacCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 85822 | 0.68 | 0.715312 |
Target: 5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3' miRNA: 3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 69276 | 0.68 | 0.705345 |
Target: 5'- --cGAACgGCGGCCGUuGCCaCCGCg -3' miRNA: 3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 25762 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 62314 | 0.68 | 0.725208 |
Target: 5'- gGGAGAGCccaGCgaGGCCAgagacGCCGCCGCc -3' miRNA: 3'- -CUUCUUGa--CG--UCGGUac---CGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 108253 | 0.68 | 0.735024 |
Target: 5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3' miRNA: 3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 68475 | 0.68 | 0.735024 |
Target: 5'- -uGGAccuGCUGCgGGCUAUGGCUcuuugGCCGCc -3' miRNA: 3'- cuUCU---UGACG-UCGGUACCGG-----CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 28840 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 22684 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 90153 | 0.68 | 0.715312 |
Target: 5'- -cGGAGCaggagGCAGCCGagguagaGGCCGCgGCa -3' miRNA: 3'- cuUCUUGa----CGUCGGUa------CCGGCGgCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 166936 | 0.68 | 0.735024 |
Target: 5'- --cGGugUGCAGCCAgggGGagUGCUGCUg -3' miRNA: 3'- cuuCUugACGUCGGUa--CCg-GCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 103110 | 0.67 | 0.79173 |
Target: 5'- -cGGGGCaG-AGCC-UGGCCGCCGUc -3' miRNA: 3'- cuUCUUGaCgUCGGuACCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 42775 | 0.67 | 0.773306 |
Target: 5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3' miRNA: 3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 49078 | 0.67 | 0.75438 |
Target: 5'- aGGAGGGCUGaGGCUccGGCUGUgGCUc -3' miRNA: 3'- -CUUCUUGACgUCGGuaCCGGCGgCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 102752 | 0.67 | 0.75438 |
Target: 5'- cGggGAGgagGCAGCCccuuuccugcGUGGCguggCGCCGCUc -3' miRNA: 3'- -CuuCUUga-CGUCGG----------UACCG----GCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 75704 | 0.67 | 0.75438 |
Target: 5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3' miRNA: 3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 114098 | 0.67 | 0.773306 |
Target: 5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3' miRNA: 3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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