Results 101 - 110 of 110 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 28897 | 5' | -57.8 | NC_006146.1 | + | 161730 | 0.66 | 0.800731 |
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Target: 5'- uGAAGAACccuUGUAGCCcgggGGUgGCgGCUg -3' miRNA: 3'- -CUUCUUG---ACGUCGGua--CCGgCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 62831 | 0.66 | 0.80958 |
|
Target: 5'- -uGGAACccugGCcGCCGUGGCCagGCCGg- -3' miRNA: 3'- cuUCUUGa---CGuCGGUACCGG--CGGCga -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 14989 | 0.66 | 0.80958 |
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Target: 5'- aGAGGGCUGCGGCCAUucCCGUCuCUc -3' miRNA: 3'- cUUCUUGACGUCGGUAccGGCGGcGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 21052 | 0.66 | 0.818269 |
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Target: 5'- cGAGAcGCUGCgcuucgccgaGGCCcUGGCCGCC-Ca -3' miRNA: 3'- cUUCU-UGACG----------UCGGuACCGGCGGcGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 24214 | 0.66 | 0.818269 |
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Target: 5'- cGAGGuuCUGUuggGGCCggGGCCGCC-Ca -3' miRNA: 3'- -CUUCuuGACG---UCGGuaCCGGCGGcGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 105608 | 0.66 | 0.826789 |
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Target: 5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3' miRNA: 3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 106023 | 0.66 | 0.826789 |
|
Target: 5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3' miRNA: 3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92054 | 0.66 | 0.826789 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92203 | 0.66 | 0.826789 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 55709 | 0.66 | 0.843293 |
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Target: 5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3' miRNA: 3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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