Results 61 - 80 of 110 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 19606 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 25762 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 28840 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 69276 | 0.68 | 0.705345 |
Target: 5'- --cGAACgGCGGCCGUuGCCaCCGCg -3' miRNA: 3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 13450 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 90153 | 0.68 | 0.715312 |
Target: 5'- -cGGAGCaggagGCAGCCGagguagaGGCCGCgGCa -3' miRNA: 3'- cuUCUUGa----CGUCGGUa------CCGGCGgCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 76968 | 0.68 | 0.715312 |
Target: 5'- cGGAGAGC-GgAGCCcc-GCCGCCGCc -3' miRNA: 3'- -CUUCUUGaCgUCGGuacCGGCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 85822 | 0.68 | 0.715312 |
Target: 5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3' miRNA: 3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 57141 | 0.68 | 0.725208 |
Target: 5'- cGggGGGCUgGUGGCCGa--CCGCCGCUu -3' miRNA: 3'- -CuuCUUGA-CGUCGGUaccGGCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 62314 | 0.68 | 0.725208 |
Target: 5'- gGGAGAGCccaGCgaGGCCAgagacGCCGCCGCc -3' miRNA: 3'- -CUUCUUGa--CG--UCGGUac---CGGCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 108253 | 0.68 | 0.735024 |
Target: 5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3' miRNA: 3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 68475 | 0.68 | 0.735024 |
Target: 5'- -uGGAccuGCUGCgGGCUAUGGCUcuuugGCCGCc -3' miRNA: 3'- cuUCU---UGACG-UCGGUACCGG-----CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 166936 | 0.68 | 0.735024 |
Target: 5'- --cGGugUGCAGCCAgggGGagUGCUGCUg -3' miRNA: 3'- cuuCUugACGUCGGUa--CCg-GCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 57396 | 0.68 | 0.735024 |
Target: 5'- -uAGAAUgGCGGCCAUGGCC-CC-CUc -3' miRNA: 3'- cuUCUUGaCGUCGGUACCGGcGGcGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 99084 | 0.67 | 0.75438 |
Target: 5'- uGGAGGGCccGCAGCCA-GGuCCGCaCGUc -3' miRNA: 3'- -CUUCUUGa-CGUCGGUaCC-GGCG-GCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 111424 | 0.67 | 0.75438 |
Target: 5'- -cAGGACU-CAGCCGUGGCCaUUGCc -3' miRNA: 3'- cuUCUUGAcGUCGGUACCGGcGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 49078 | 0.67 | 0.75438 |
Target: 5'- aGGAGGGCUGaGGCUccGGCUGUgGCUc -3' miRNA: 3'- -CUUCUUGACgUCGGuaCCGGCGgCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 75704 | 0.67 | 0.75438 |
Target: 5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3' miRNA: 3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 102752 | 0.67 | 0.75438 |
Target: 5'- cGggGAGgagGCAGCCccuuuccugcGUGGCguggCGCCGCUc -3' miRNA: 3'- -CuuCUUga-CGUCGG----------UACCG----GCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 55378 | 0.67 | 0.763901 |
Target: 5'- uGGGAGCU-CAGCgcaAUGGCaCGCUGCUc -3' miRNA: 3'- cUUCUUGAcGUCGg--UACCG-GCGGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home