Results 101 - 110 of 110 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28897 | 5' | -57.8 | NC_006146.1 | + | 106023 | 0.66 | 0.826789 |
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Target: 5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3' miRNA: 3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 105608 | 0.66 | 0.826789 |
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Target: 5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3' miRNA: 3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 158410 | 0.66 | 0.826789 |
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Target: 5'- cGAGuACUGCAGCaCGUGGuaGCaGCUc -3' miRNA: 3'- cUUCuUGACGUCG-GUACCggCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 152278 | 0.66 | 0.835133 |
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Target: 5'- uGGAGugcuCUGCuGGCCAccgaagguuUGGUCGcCCGCUg -3' miRNA: 3'- -CUUCuu--GACG-UCGGU---------ACCGGC-GGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 53162 | 0.66 | 0.835133 |
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Target: 5'- ---cGACUGCGGCgGUGGCCGgaagGCUc -3' miRNA: 3'- cuucUUGACGUCGgUACCGGCgg--CGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 115646 | 0.66 | 0.835133 |
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Target: 5'- --cGAGCcGCuucGCCcgGGCCGCCcggGCg -3' miRNA: 3'- cuuCUUGaCGu--CGGuaCCGGCGG---CGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 163213 | 0.66 | 0.842486 |
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Target: 5'- aGAGGAGCcggGCAgGCCGUaGGCaggguagCGCUGCUc -3' miRNA: 3'- -CUUCUUGa--CGU-CGGUA-CCG-------GCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 47819 | 0.66 | 0.843293 |
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Target: 5'- cGAGAaaaGCUGCuaaaCAUGGCC-CCGCa -3' miRNA: 3'- cUUCU---UGACGucg-GUACCGGcGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 128792 | 0.66 | 0.843293 |
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Target: 5'- aGAGGccCUcGUAGUCGUGcGCCGuCCGCg -3' miRNA: 3'- -CUUCuuGA-CGUCGGUAC-CGGC-GGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 55709 | 0.66 | 0.843293 |
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Target: 5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3' miRNA: 3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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