Results 81 - 100 of 110 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 105608 | 0.66 | 0.826789 |
Target: 5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3' miRNA: 3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 106023 | 0.66 | 0.826789 |
Target: 5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3' miRNA: 3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 108253 | 0.68 | 0.735024 |
Target: 5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3' miRNA: 3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 109294 | 0.7 | 0.583404 |
Target: 5'- gGAGGGAUcucgGCcccGGCCGcGGCCGCUGCa -3' miRNA: 3'- -CUUCUUGa---CG---UCGGUaCCGGCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 111424 | 0.67 | 0.75438 |
Target: 5'- -cAGGACU-CAGCCGUGGCCaUUGCc -3' miRNA: 3'- cuUCUUGAcGUCGGUACCGGcGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 113505 | 0.69 | 0.685236 |
Target: 5'- -cAGGAg-GgGGCCAUGGCCGCCa-- -3' miRNA: 3'- cuUCUUgaCgUCGGUACCGGCGGcga -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 114098 | 0.67 | 0.773306 |
Target: 5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3' miRNA: 3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 115379 | 0.75 | 0.354241 |
Target: 5'- -cGGAGCUGgaGGCCcUGGCCGCuCGCg -3' miRNA: 3'- cuUCUUGACg-UCGGuACCGGCG-GCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 115646 | 0.66 | 0.835133 |
Target: 5'- --cGAGCcGCuucGCCcgGGCCGCCcggGCg -3' miRNA: 3'- cuuCUUGaCGu--CGGuaCCGGCGG---CGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 117875 | 0.69 | 0.634348 |
Target: 5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3' miRNA: 3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 120541 | 0.72 | 0.494391 |
Target: 5'- -cGGGACUGCuGGCCAagauccccaggcUGGCCgagGCCGCg -3' miRNA: 3'- cuUCUUGACG-UCGGU------------ACCGG---CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 122794 | 0.72 | 0.475414 |
Target: 5'- aGAAGAGacggGCGGCCGaGGCCG-CGCUg -3' miRNA: 3'- -CUUCUUga--CGUCGGUaCCGGCgGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 124833 | 0.69 | 0.654766 |
Target: 5'- cGAGGcccuGCaGCAGCUAUGGCacuCGCUGCg -3' miRNA: 3'- -CUUCu---UGaCGUCGGUACCG---GCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 125094 | 0.66 | 0.826789 |
Target: 5'- --cGAg--GCGGCCGUGGCgGCgGCc -3' miRNA: 3'- cuuCUugaCGUCGGUACCGgCGgCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 127502 | 0.7 | 0.603726 |
Target: 5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3' miRNA: 3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 128792 | 0.66 | 0.843293 |
Target: 5'- aGAGGccCUcGUAGUCGUGcGCCGuCCGCg -3' miRNA: 3'- -CUUCuuGA-CGUCGGUAC-CGGC-GGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 131078 | 0.69 | 0.675111 |
Target: 5'- ------gUGCGGCCGaGGCCGCCGg- -3' miRNA: 3'- cuucuugACGUCGGUaCCGGCGGCga -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 146218 | 0.7 | 0.624132 |
Target: 5'- cGggGuaAGCgGCGGCCAUGGCUGCaGUUc -3' miRNA: 3'- -CuuC--UUGaCGUCGGUACCGGCGgCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 149199 | 0.66 | 0.80958 |
Target: 5'- aGAGGcACUGCAGgaUguUGGCCGCCcccuGCa -3' miRNA: 3'- -CUUCuUGACGUC--GguACCGGCGG----CGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 152278 | 0.66 | 0.835133 |
Target: 5'- uGGAGugcuCUGCuGGCCAccgaagguuUGGUCGcCCGCUg -3' miRNA: 3'- -CUUCuu--GACG-UCGGU---------ACCGGC-GGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home