Results 101 - 110 of 110 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28897 | 5' | -57.8 | NC_006146.1 | + | 154890 | 0.66 | 0.80958 |
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Target: 5'- cGggGGGCaggGCcucGCCcgGGCUGaCCGCg -3' miRNA: 3'- -CuuCUUGa--CGu--CGGuaCCGGC-GGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 155477 | 0.74 | 0.403467 |
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Target: 5'- -cAGGACUGCAGCCG-GGCCaGCCcCUc -3' miRNA: 3'- cuUCUUGACGUCGGUaCCGG-CGGcGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 155763 | 0.69 | 0.664952 |
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Target: 5'- cGAGGAGCUGUAGaCC----CCGCCGCa -3' miRNA: 3'- -CUUCUUGACGUC-GGuaccGGCGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 156843 | 0.72 | 0.475414 |
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Target: 5'- gGGAGGACcGCAGCCA--GCCGgCGCUu -3' miRNA: 3'- -CUUCUUGaCGUCGGUacCGGCgGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 158410 | 0.66 | 0.826789 |
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Target: 5'- cGAGuACUGCAGCaCGUGGuaGCaGCUc -3' miRNA: 3'- cUUCuUGACGUCG-GUACCggCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 161730 | 0.66 | 0.800731 |
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Target: 5'- uGAAGAACccuUGUAGCCcgggGGUgGCgGCUg -3' miRNA: 3'- -CUUCUUG---ACGUCGGua--CCGgCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 162334 | 0.75 | 0.338801 |
|
Target: 5'- -uGGuGCUGCAGCCcgGGCUGCaGCUa -3' miRNA: 3'- cuUCuUGACGUCGGuaCCGGCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 163213 | 0.66 | 0.842486 |
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Target: 5'- aGAGGAGCcggGCAgGCCGUaGGCaggguagCGCUGCUc -3' miRNA: 3'- -CUUCUUGa--CGU-CGGUA-CCG-------GCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 166535 | 0.73 | 0.438598 |
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Target: 5'- uGggGAGCccGCggGGCCGUGGCCacGUCGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGUACCGG--CGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 166936 | 0.68 | 0.735024 |
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Target: 5'- --cGGugUGCAGCCAgggGGagUGCUGCUg -3' miRNA: 3'- cuuCUugACGUCGGUa--CCg-GCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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