miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 92143 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92113 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92084 0.71 0.523479
Target:  5'- uGggGGGCgGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGaCG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92054 0.66 0.826789
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92024 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 90153 0.68 0.715312
Target:  5'- -cGGAGCaggagGCAGCCGagguagaGGCCGCgGCa -3'
miRNA:   3'- cuUCUUGa----CGUCGGUa------CCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 85822 0.68 0.715312
Target:  5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3'
miRNA:   3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 83592 0.74 0.403467
Target:  5'- -cAGGACUuCGGCUAUGGCuCGCUGCUc -3'
miRNA:   3'- cuUCUUGAcGUCGGUACCG-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 76968 0.68 0.715312
Target:  5'- cGGAGAGC-GgAGCCcc-GCCGCCGCc -3'
miRNA:   3'- -CUUCUUGaCgUCGGuacCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 76925 0.76 0.30237
Target:  5'- -cGGGGCUGCAGCCG-GGUgaacUGCCGCUg -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCG----GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 75704 0.67 0.75438
Target:  5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3'
miRNA:   3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 71467 0.66 0.80958
Target:  5'- -uGGAACUGUuuCCAgGGCCuGCCGUUu -3'
miRNA:   3'- cuUCUUGACGucGGUaCCGG-CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 69276 0.68 0.705345
Target:  5'- --cGAACgGCGGCCGUuGCCaCCGCg -3'
miRNA:   3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 68475 0.68 0.735024
Target:  5'- -uGGAccuGCUGCgGGCUAUGGCUcuuugGCCGCc -3'
miRNA:   3'- cuUCU---UGACG-UCGGUACCGG-----CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 67182 0.71 0.547212
Target:  5'- gGAGGAACUGcUccuugggauuccacuGGCCGUGGCCgGUCGCc -3'
miRNA:   3'- -CUUCUUGAC-G---------------UCGGUACCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 62831 0.66 0.80958
Target:  5'- -uGGAACccugGCcGCCGUGGCCagGCCGg- -3'
miRNA:   3'- cuUCUUGa---CGuCGGUACCGG--CGGCga -5'
28897 5' -57.8 NC_006146.1 + 62314 0.68 0.725208
Target:  5'- gGGAGAGCccaGCgaGGCCAgagacGCCGCCGCc -3'
miRNA:   3'- -CUUCUUGa--CG--UCGGUac---CGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 61589 0.7 0.613922
Target:  5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3'
miRNA:   3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 58956 0.69 0.663934
Target:  5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3'
miRNA:   3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 57396 0.68 0.735024
Target:  5'- -uAGAAUgGCGGCCAUGGCC-CC-CUc -3'
miRNA:   3'- cuUCUUGaCGUCGGUACCGGcGGcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.