Results 81 - 100 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 42996 | 0.66 | 0.819129 |
Target: 5'- -uAGAAUUGCcGCCGggugagaggugcgagGGCUGCCGUc -3' miRNA: 3'- cuUCUUGACGuCGGUa--------------CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 42775 | 0.67 | 0.773306 |
Target: 5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3' miRNA: 3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 42608 | 0.74 | 0.394966 |
Target: 5'- aGAGAGCUGaccgaAGCCuggggcucGGCCGCCGCc -3' miRNA: 3'- cUUCUUGACg----UCGGua------CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 41357 | 0.7 | 0.613922 |
Target: 5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3' miRNA: 3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 40355 | 0.71 | 0.513706 |
Target: 5'- uGggGAuCUGCGGCgGagaaggcccccUGGUCGCCGCc -3' miRNA: 3'- -CuuCUuGACGUCGgU-----------ACCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 39977 | 0.71 | 0.563222 |
Target: 5'- aGGAGAggcugaggcuGCUGCGGCCcguaGUGGCCGgUGUg -3' miRNA: 3'- -CUUCU----------UGACGUCGG----UACCGGCgGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 39809 | 0.69 | 0.675111 |
Target: 5'- -uGGGACgGCGGCCGUugacggcccggcGGCCucgGCCGCa -3' miRNA: 3'- cuUCUUGaCGUCGGUA------------CCGG---CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33339 | 0.7 | 0.603726 |
Target: 5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3' miRNA: 3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33218 | 0.69 | 0.685236 |
Target: 5'- -uGGuGCUccgggGCAGCCggGUGGCCGCCGg- -3' miRNA: 3'- cuUCuUGA-----CGUCGG--UACCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33105 | 0.68 | 0.705345 |
Target: 5'- -------gGCAGCCggGUGGCCGCCGg- -3' miRNA: 3'- cuucuugaCGUCGG--UACCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 30181 | 0.7 | 0.592535 |
Target: 5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3' miRNA: 3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 29127 | 0.71 | 0.513706 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 28840 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 26050 | 0.71 | 0.543231 |
Target: 5'- gGGAGAGCcGCuGCaauUGGcCCGCCGCa -3' miRNA: 3'- -CUUCUUGaCGuCGgu-ACC-GGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 26049 | 0.71 | 0.513706 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 25762 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 24676 | 1.06 | 0.002637 |
Target: 5'- gGAAGAACUGCAGCCAUGGCCGCCGCUu -3' miRNA: 3'- -CUUCUUGACGUCGGUACCGGCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 24214 | 0.66 | 0.818269 |
Target: 5'- cGAGGuuCUGUuggGGCCggGGCCGCC-Ca -3' miRNA: 3'- -CUUCuuGACG---UCGGuaCCGGCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 22971 | 0.71 | 0.513706 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 22684 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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