miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 127502 0.7 0.603726
Target:  5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3'
miRNA:   3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 52888 0.7 0.624132
Target:  5'- gGGAGAACUGgucaCGGCCGUGaGCUacgGCCGUg -3'
miRNA:   3'- -CUUCUUGAC----GUCGGUAC-CGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 105608 0.66 0.826789
Target:  5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3'
miRNA:   3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 106023 0.66 0.826789
Target:  5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3'
miRNA:   3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 125094 0.66 0.826789
Target:  5'- --cGAg--GCGGCCGUGGCgGCgGCc -3'
miRNA:   3'- cuuCUugaCGUCGGUACCGgCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 103110 0.67 0.79173
Target:  5'- -cGGGGCaG-AGCC-UGGCCGCCGUc -3'
miRNA:   3'- cuUCUUGaCgUCGGuACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 42775 0.67 0.773306
Target:  5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3'
miRNA:   3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 114098 0.67 0.773306
Target:  5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3'
miRNA:   3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 117875 0.69 0.634348
Target:  5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3'
miRNA:   3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 61589 0.7 0.613922
Target:  5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3'
miRNA:   3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5'
28897 5' -57.8 NC_006146.1 + 39809 0.69 0.675111
Target:  5'- -uGGGACgGCGGCCGUugacggcccggcGGCCucgGCCGCa -3'
miRNA:   3'- cuUCUUGaCGUCGGUA------------CCGG---CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 69276 0.68 0.705345
Target:  5'- --cGAACgGCGGCCGUuGCCaCCGCg -3'
miRNA:   3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 85822 0.68 0.715312
Target:  5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3'
miRNA:   3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 24676 1.06 0.002637
Target:  5'- gGAAGAACUGCAGCCAUGGCCGCCGCUu -3'
miRNA:   3'- -CUUCUUGACGUCGGUACCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 76925 0.76 0.30237
Target:  5'- -cGGGGCUGCAGCCG-GGUgaacUGCCGCUg -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCG----GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 115379 0.75 0.354241
Target:  5'- -cGGAGCUGgaGGCCcUGGCCGCuCGCg -3'
miRNA:   3'- cuUCUUGACg-UCGGuACCGGCG-GCGa -5'
28897 5' -57.8 NC_006146.1 + 42608 0.74 0.394966
Target:  5'- aGAGAGCUGaccgaAGCCuggggcucGGCCGCCGCc -3'
miRNA:   3'- cUUCUUGACg----UCGGua------CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 83592 0.74 0.403467
Target:  5'- -cAGGACUuCGGCUAUGGCuCGCUGCUc -3'
miRNA:   3'- cuUCUUGAcGUCGGUACCG-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92233 0.73 0.438598
Target:  5'- uGggGGGCggGCccGGCCuGUGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGG-UACCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 124833 0.69 0.654766
Target:  5'- cGAGGcccuGCaGCAGCUAUGGCacuCGCUGCg -3'
miRNA:   3'- -CUUCu---UGaCGUCGGUACCG---GCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.