Results 81 - 100 of 110 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 117875 | 0.69 | 0.634348 |
Target: 5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3' miRNA: 3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 52888 | 0.7 | 0.624132 |
Target: 5'- gGGAGAACUGgucaCGGCCGUGaGCUacgGCCGUg -3' miRNA: 3'- -CUUCUUGAC----GUCGGUAC-CGG---CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 122794 | 0.72 | 0.475414 |
Target: 5'- aGAAGAGacggGCGGCCGaGGCCG-CGCUg -3' miRNA: 3'- -CUUCUUga--CGUCGGUaCCGGCgGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 8568 | 0.73 | 0.447651 |
Target: 5'- ---uAGCUGCAGCCcgGGCUGCaGCa -3' miRNA: 3'- cuucUUGACGUCGGuaCCGGCGgCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 166535 | 0.73 | 0.438598 |
Target: 5'- uGggGAGCccGCggGGCCGUGGCCacGUCGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGUACCGG--CGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 92233 | 0.73 | 0.438598 |
Target: 5'- uGggGGGCggGCccGGCCuGUGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGG-UACCGGCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 83592 | 0.74 | 0.403467 |
Target: 5'- -cAGGACUuCGGCUAUGGCuCGCUGCUc -3' miRNA: 3'- cuUCUUGAcGUCGGUACCG-GCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 42608 | 0.74 | 0.394966 |
Target: 5'- aGAGAGCUGaccgaAGCCuggggcucGGCCGCCGCc -3' miRNA: 3'- cUUCUUGACg----UCGGua------CCGGCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 115379 | 0.75 | 0.354241 |
Target: 5'- -cGGAGCUGgaGGCCcUGGCCGCuCGCg -3' miRNA: 3'- cuUCUUGACg-UCGGuACCGGCG-GCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 76925 | 0.76 | 0.30237 |
Target: 5'- -cGGGGCUGCAGCCG-GGUgaacUGCCGCUg -3' miRNA: 3'- cuUCUUGACGUCGGUaCCG----GCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 120541 | 0.72 | 0.494391 |
Target: 5'- -cGGGACUGCuGGCCAagauccccaggcUGGCCgagGCCGCg -3' miRNA: 3'- cuUCUUGACG-UCGGU------------ACCGG---CGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 52992 | 0.72 | 0.504009 |
Target: 5'- -cGGAcCUGcCGGCCGUGGCCGCgGg- -3' miRNA: 3'- cuUCUuGAC-GUCGGUACCGGCGgCga -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 61589 | 0.7 | 0.613922 |
Target: 5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3' miRNA: 3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 127502 | 0.7 | 0.603726 |
Target: 5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3' miRNA: 3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 92293 | 0.7 | 0.573293 |
Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 92113 | 0.7 | 0.573293 |
Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 92024 | 0.7 | 0.573293 |
Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 39977 | 0.71 | 0.563222 |
Target: 5'- aGGAGAggcugaggcuGCUGCGGCCcguaGUGGCCGgUGUg -3' miRNA: 3'- -CUUCU----------UGACGUCGG----UACCGGCgGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 26050 | 0.71 | 0.543231 |
Target: 5'- gGGAGAGCcGCuGCaauUGGcCCGCCGCa -3' miRNA: 3'- -CUUCUUGaCGuCGgu-ACC-GGCGGCGa -5' |
|||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 40355 | 0.71 | 0.513706 |
Target: 5'- uGggGAuCUGCGGCgGagaaggcccccUGGUCGCCGCc -3' miRNA: 3'- -CuuCUuGACGUCGgU-----------ACCGGCGGCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home