Results 101 - 110 of 110 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28897 | 5' | -57.8 | NC_006146.1 | + | 61589 | 0.7 | 0.613922 |
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Target: 5'- gGAAGAgccgGCUGCAGC---GGCCGCgGCc -3' miRNA: 3'- -CUUCU----UGACGUCGguaCCGGCGgCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 127502 | 0.7 | 0.603726 |
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Target: 5'- cGGGggUcGCAGCCggGGCagaggcaGCCGCUg -3' miRNA: 3'- cUUCuuGaCGUCGGuaCCGg------CGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92293 | 0.7 | 0.573293 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92263 | 0.7 | 0.573293 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92173 | 0.7 | 0.573293 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92143 | 0.7 | 0.573293 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92113 | 0.7 | 0.573293 |
|
Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 92024 | 0.7 | 0.573293 |
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Target: 5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3' miRNA: 3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 39977 | 0.71 | 0.563222 |
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Target: 5'- aGGAGAggcugaggcuGCUGCGGCCcguaGUGGCCGgUGUg -3' miRNA: 3'- -CUUCU----------UGACGUCGG----UACCGGCgGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 24676 | 1.06 | 0.002637 |
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Target: 5'- gGAAGAACUGCAGCCAUGGCCGCCGCUu -3' miRNA: 3'- -CUUCUUGACGUCGGUACCGGCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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