miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 69276 0.68 0.705345
Target:  5'- --cGAACgGCGGCCGUuGCCaCCGCg -3'
miRNA:   3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 85822 0.68 0.715312
Target:  5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3'
miRNA:   3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 76968 0.68 0.715312
Target:  5'- cGGAGAGC-GgAGCCcc-GCCGCCGCc -3'
miRNA:   3'- -CUUCUUGaCgUCGGuacCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 57396 0.68 0.735024
Target:  5'- -uAGAAUgGCGGCCAUGGCC-CC-CUc -3'
miRNA:   3'- cuUCUUGaCGUCGGUACCGGcGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 108253 0.68 0.735024
Target:  5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3'
miRNA:   3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 49078 0.67 0.75438
Target:  5'- aGGAGGGCUGaGGCUccGGCUGUgGCUc -3'
miRNA:   3'- -CUUCUUGACgUCGGuaCCGGCGgCGA- -5'
28897 5' -57.8 NC_006146.1 + 75704 0.67 0.75438
Target:  5'- gGAGGAGCUGCAGCgCAgggaccUGGCCaaguacugGaCCGUg -3'
miRNA:   3'- -CUUCUUGACGUCG-GU------ACCGG--------C-GGCGa -5'
28897 5' -57.8 NC_006146.1 + 102752 0.67 0.75438
Target:  5'- cGggGAGgagGCAGCCccuuuccugcGUGGCguggCGCCGCUc -3'
miRNA:   3'- -CuuCUUga-CGUCGG----------UACCG----GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 55378 0.67 0.763901
Target:  5'- uGGGAGCU-CAGCgcaAUGGCaCGCUGCUc -3'
miRNA:   3'- cUUCUUGAcGUCGg--UACCG-GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 114098 0.67 0.773306
Target:  5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3'
miRNA:   3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 42775 0.67 0.773306
Target:  5'- cAGGuGCagGCGGCgCGUGGCCGCCu-- -3'
miRNA:   3'- cUUCuUGa-CGUCG-GUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 19894 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 16816 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 13738 0.71 0.513706
Target:  5'- gGAGGGACcccgGCAGCCcgGGagaGCCGCc -3'
miRNA:   3'- -CUUCUUGa---CGUCGGuaCCgg-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 156843 0.72 0.475414
Target:  5'- gGGAGGACcGCAGCCA--GCCGgCGCUu -3'
miRNA:   3'- -CUUCUUGaCGUCGGUacCGGCgGCGA- -5'
28897 5' -57.8 NC_006146.1 + 52081 0.73 0.42965
Target:  5'- gGGAGGGCUGCGGUCGggGGCCGgCGa- -3'
miRNA:   3'- -CUUCUUGACGUCGGUa-CCGGCgGCga -5'
28897 5' -57.8 NC_006146.1 + 45571 0.73 0.420811
Target:  5'- cGAGGAGCUcgcGCAGCCA-GGCgGCCuGCc -3'
miRNA:   3'- -CUUCUUGA---CGUCGGUaCCGgCGG-CGa -5'
28897 5' -57.8 NC_006146.1 + 155477 0.74 0.403467
Target:  5'- -cAGGACUGCAGCCG-GGCCaGCCcCUc -3'
miRNA:   3'- cuUCUUGACGUCGGUaCCGG-CGGcGA- -5'
28897 5' -57.8 NC_006146.1 + 44315 0.74 0.37017
Target:  5'- uGGGGGCUGgGGCCGUGGCaGCCGg- -3'
miRNA:   3'- cUUCUUGACgUCGGUACCGgCGGCga -5'
28897 5' -57.8 NC_006146.1 + 55709 0.66 0.843293
Target:  5'- cGggGGGCucUGCccGCCGcUGGCCuCCGCg -3'
miRNA:   3'- -CuuCUUG--ACGu-CGGU-ACCGGcGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.