Results 101 - 110 of 110 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28897 | 5' | -57.8 | NC_006146.1 | + | 44022 | 0.69 | 0.664952 |
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Target: 5'- cGggGAGgggGCGGCCGagGGCC-CCGCUu -3' miRNA: 3'- -CuuCUUga-CGUCGGUa-CCGGcGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 58956 | 0.69 | 0.663934 |
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Target: 5'- uGAGGuGCUGCAGCCcucgagggagacgGUGGCCaCCuGCa -3' miRNA: 3'- -CUUCuUGACGUCGG-------------UACCGGcGG-CGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 55926 | 0.69 | 0.634348 |
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Target: 5'- --uGAugUccGCGGCCGUgGGCUGCUGCg -3' miRNA: 3'- cuuCUugA--CGUCGGUA-CCGGCGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 146218 | 0.7 | 0.624132 |
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Target: 5'- cGggGuaAGCgGCGGCCAUGGCUGCaGUUc -3' miRNA: 3'- -CuuC--UUGaCGUCGGUACCGGCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 54037 | 0.7 | 0.620047 |
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Target: 5'- cGGAGGGCggccaugucggcgGUGGUCAgggcccaccUGGCCGCCGCg -3' miRNA: 3'- -CUUCUUGa------------CGUCGGU---------ACCGGCGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 41357 | 0.7 | 0.613922 |
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Target: 5'- -cAGGGCcugGCGGUgGUGGCCGUgGCUc -3' miRNA: 3'- cuUCUUGa--CGUCGgUACCGGCGgCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 33339 | 0.7 | 0.603726 |
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Target: 5'- cGGGuGCUccgggGCAGCCggGUGGCCGCCGgUg -3' miRNA: 3'- cUUCuUGA-----CGUCGG--UACCGGCGGCgA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 30181 | 0.7 | 0.592535 |
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Target: 5'- aGGGGGCUaaaauuaagcaagGaCAGCCAgagGGCCGCUGCg -3' miRNA: 3'- cUUCUUGA-------------C-GUCGGUa--CCGGCGGCGa -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 44705 | 0.7 | 0.583404 |
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Target: 5'- ---cGGCgGUGGCCGUGGCCcCCGCUg -3' miRNA: 3'- cuucUUGaCGUCGGUACCGGcGGCGA- -5' |
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| 28897 | 5' | -57.8 | NC_006146.1 | + | 162334 | 0.75 | 0.338801 |
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Target: 5'- -uGGuGCUGCAGCCcgGGCUGCaGCUa -3' miRNA: 3'- cuUCuUGACGUCGGuaCCGGCGgCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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