Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28897 | 5' | -57.8 | NC_006146.1 | + | 62314 | 0.68 | 0.725208 |
Target: 5'- gGGAGAGCccaGCgaGGCCAgagacGCCGCCGCc -3' miRNA: 3'- -CUUCUUGa--CG--UCGGUac---CGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 57141 | 0.68 | 0.725208 |
Target: 5'- cGggGGGCUgGUGGCCGa--CCGCCGCUu -3' miRNA: 3'- -CuuCUUGA-CGUCGGUaccGGCGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 90153 | 0.68 | 0.715312 |
Target: 5'- -cGGAGCaggagGCAGCCGagguagaGGCCGCgGCa -3' miRNA: 3'- cuUCUUGa----CGUCGGUa------CCGGCGgCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 76968 | 0.68 | 0.715312 |
Target: 5'- cGGAGAGC-GgAGCCcc-GCCGCCGCc -3' miRNA: 3'- -CUUCUUGaCgUCGGuacCGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 85822 | 0.68 | 0.715312 |
Target: 5'- uGggGAGCUGguGCCuUGGCUuuaaaagaggaGCUGUc -3' miRNA: 3'- -CuuCUUGACguCGGuACCGG-----------CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 69276 | 0.68 | 0.705345 |
Target: 5'- --cGAACgGCGGCCGUuGCCaCCGCg -3' miRNA: 3'- cuuCUUGaCGUCGGUAcCGGcGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33105 | 0.68 | 0.705345 |
Target: 5'- -------gGCAGCCggGUGGCCGCCGg- -3' miRNA: 3'- cuucuugaCGUCGG--UACCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 13450 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 16528 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 25762 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 19606 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 28840 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 22684 | 0.68 | 0.705345 |
Target: 5'- gGAGGGACcccgGCAGCCcgGGUgGCCcCa -3' miRNA: 3'- -CUUCUUGa---CGUCGGuaCCGgCGGcGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 33218 | 0.69 | 0.685236 |
Target: 5'- -uGGuGCUccgggGCAGCCggGUGGCCGCCGg- -3' miRNA: 3'- cuUCuUGA-----CGUCGG--UACCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 113505 | 0.69 | 0.685236 |
Target: 5'- -cAGGAg-GgGGCCAUGGCCGCCa-- -3' miRNA: 3'- cuUCUUgaCgUCGGUACCGGCGGcga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 39809 | 0.69 | 0.675111 |
Target: 5'- -uGGGACgGCGGCCGUugacggcccggcGGCCucgGCCGCa -3' miRNA: 3'- cuUCUUGaCGUCGGUA------------CCGG---CGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 131078 | 0.69 | 0.675111 |
Target: 5'- ------gUGCGGCCGaGGCCGCCGg- -3' miRNA: 3'- cuucuugACGUCGGUaCCGGCGGCga -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 44022 | 0.69 | 0.664952 |
Target: 5'- cGggGAGgggGCGGCCGagGGCC-CCGCUu -3' miRNA: 3'- -CuuCUUga-CGUCGGUa-CCGGcGGCGA- -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 155763 | 0.69 | 0.664952 |
Target: 5'- cGAGGAGCUGUAGaCC----CCGCCGCa -3' miRNA: 3'- -CUUCUUGACGUC-GGuaccGGCGGCGa -5' |
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28897 | 5' | -57.8 | NC_006146.1 | + | 94930 | 0.69 | 0.664952 |
Target: 5'- -cAGAcgaUGCAGgggaCGUGGCCGCUGCg -3' miRNA: 3'- cuUCUug-ACGUCg---GUACCGGCGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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