miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28898 3' -58.1 NC_006146.1 + 98690 0.66 0.831573
Target:  5'- aGUGggugGGGCCGCUgGuCUccCGCCCAUc- -3'
miRNA:   3'- aCACa---CCUGGCGGgU-GA--GCGGGUAuu -5'
28898 3' -58.1 NC_006146.1 + 54394 0.66 0.831573
Target:  5'- aUGgGUGGuGCCGCCUcCUCGCgCCGc-- -3'
miRNA:   3'- -ACaCACC-UGGCGGGuGAGCG-GGUauu -5'
28898 3' -58.1 NC_006146.1 + 100725 0.66 0.823207
Target:  5'- gGUGUGGgaccggccucGCCGgCCACcagCGCCCcgGc -3'
miRNA:   3'- aCACACC----------UGGCgGGUGa--GCGGGuaUu -5'
28898 3' -58.1 NC_006146.1 + 110455 0.66 0.805969
Target:  5'- ----cGGccuGCCGCUCACUCGgCCAUGGu -3'
miRNA:   3'- acacaCC---UGGCGGGUGAGCgGGUAUU- -5'
28898 3' -58.1 NC_006146.1 + 31699 0.66 0.797114
Target:  5'- gGUGggGGACCGCggcugCCAC-CGCCCc--- -3'
miRNA:   3'- aCACa-CCUGGCG-----GGUGaGCGGGuauu -5'
28898 3' -58.1 NC_006146.1 + 9877 0.67 0.788112
Target:  5'- ----aGGACgGCCCGCUCaCCCAc-- -3'
miRNA:   3'- acacaCCUGgCGGGUGAGcGGGUauu -5'
28898 3' -58.1 NC_006146.1 + 33754 0.67 0.778972
Target:  5'- gGUGUGGuCCGCuggguCCGCUgGUCCGg-- -3'
miRNA:   3'- aCACACCuGGCG-----GGUGAgCGGGUauu -5'
28898 3' -58.1 NC_006146.1 + 122843 0.68 0.721725
Target:  5'- --cGUGGACCGCaCGCU-GCCCGg-- -3'
miRNA:   3'- acaCACCUGGCGgGUGAgCGGGUauu -5'
28898 3' -58.1 NC_006146.1 + 146419 0.68 0.691959
Target:  5'- cUG-GUGGACCGCUUAC-CGgCCCGUc- -3'
miRNA:   3'- -ACaCACCUGGCGGGUGaGC-GGGUAuu -5'
28898 3' -58.1 NC_006146.1 + 155653 0.68 0.691959
Target:  5'- cUG-GUGGACCGCUUAC-CGgCCCGUc- -3'
miRNA:   3'- -ACaCACCUGGCGGGUGaGC-GGGUAuu -5'
28898 3' -58.1 NC_006146.1 + 152575 0.68 0.691959
Target:  5'- cUG-GUGGACCGCUUAC-CGgCCCGUc- -3'
miRNA:   3'- -ACaCACCUGGCGGGUGaGC-GGGUAuu -5'
28898 3' -58.1 NC_006146.1 + 149497 0.68 0.691959
Target:  5'- cUG-GUGGACCGCUUAC-CGgCCCGUc- -3'
miRNA:   3'- -ACaCACCUGGCGGGUGaGC-GGGUAuu -5'
28898 3' -58.1 NC_006146.1 + 143341 0.68 0.691959
Target:  5'- cUG-GUGGACCGCUUAC-CGgCCCGUc- -3'
miRNA:   3'- -ACaCACCUGGCGGGUGaGC-GGGUAuu -5'
28898 3' -58.1 NC_006146.1 + 10471 0.7 0.62118
Target:  5'- cGUGaUGGgggccACCGCCCACuaccUCGCCCu--- -3'
miRNA:   3'- aCAC-ACC-----UGGCGGGUG----AGCGGGuauu -5'
28898 3' -58.1 NC_006146.1 + 29395 0.7 0.580737
Target:  5'- ----aGGcCCGUCCACUCGCCCcgAGu -3'
miRNA:   3'- acacaCCuGGCGGGUGAGCGGGuaUU- -5'
28898 3' -58.1 NC_006146.1 + 26317 0.7 0.580737
Target:  5'- ----aGGcCCGUCCACUCGCCCcgAGu -3'
miRNA:   3'- acacaCCuGGCGGGUGAGCGGGuaUU- -5'
28898 3' -58.1 NC_006146.1 + 23239 0.7 0.580737
Target:  5'- ----aGGcCCGUCCACUCGCCCcgAGu -3'
miRNA:   3'- acacaCCuGGCGGGUGAGCGGGuaUU- -5'
28898 3' -58.1 NC_006146.1 + 20161 0.7 0.580737
Target:  5'- ----aGGcCCGUCCACUCGCCCcgAGu -3'
miRNA:   3'- acacaCCuGGCGGGUGAGCGGGuaUU- -5'
28898 3' -58.1 NC_006146.1 + 17083 0.7 0.580737
Target:  5'- ----aGGcCCGUCCACUCGCCCcgAGu -3'
miRNA:   3'- acacaCCuGGCGGGUGAGCGGGuaUU- -5'
28898 3' -58.1 NC_006146.1 + 14005 0.7 0.580737
Target:  5'- ----aGGcCCGUCCACUCGCCCcgAGu -3'
miRNA:   3'- acacaCCuGGCGGGUGAGCGGGuaUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.