miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28898 5' -54.3 NC_006146.1 + 136607 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 136885 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 137164 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 137257 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 137350 0.66 0.952313
Target:  5'- -gCUGCcccGCUccgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- uaGAUGu--UGA---CGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 73441 0.66 0.948068
Target:  5'- uUgUAgAACU-CGGGGACGuugguGGCCACg -3'
miRNA:   3'- uAgAUgUUGAcGCCCCUGU-----UCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 100831 0.66 0.948068
Target:  5'- -aCUACGcCUGUGGGGAgGuGgCACUg -3'
miRNA:   3'- uaGAUGUuGACGCCCCUgUuCgGUGA- -5'
28898 5' -54.3 NC_006146.1 + 72528 0.66 0.948068
Target:  5'- ---gACGGCUGCGGcucucGGgGAGCCACg -3'
miRNA:   3'- uagaUGUUGACGCCc----CUgUUCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 10890 0.66 0.943581
Target:  5'- ---gACAGCgggGCGGuGGGCAAugcGCCACc -3'
miRNA:   3'- uagaUGUUGa--CGCC-CCUGUU---CGGUGa -5'
28898 5' -54.3 NC_006146.1 + 119808 0.67 0.928638
Target:  5'- aAUCcgGCAGCgcaagGCGGGGgACcGGCCAg- -3'
miRNA:   3'- -UAGa-UGUUGa----CGCCCC-UGuUCGGUga -5'
28898 5' -54.3 NC_006146.1 + 48962 0.67 0.923159
Target:  5'- uUCUugAGCUuccCGGGGAUGAGCguCUg -3'
miRNA:   3'- uAGAugUUGAc--GCCCCUGUUCGguGA- -5'
28898 5' -54.3 NC_006146.1 + 94928 0.67 0.923159
Target:  5'- ---cGCAGacgaUGCaGGGGACGuGGCCGCUg -3'
miRNA:   3'- uagaUGUUg---ACG-CCCCUGU-UCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 119855 0.67 0.911454
Target:  5'- uUCUACAggauaACaGCGGGGGaAGGCCAg- -3'
miRNA:   3'- uAGAUGU-----UGaCGCCCCUgUUCGGUga -5'
28898 5' -54.3 NC_006146.1 + 138115 0.67 0.898763
Target:  5'- ---aGguGCUGCGGGGAUAGGCagccgGCUg -3'
miRNA:   3'- uagaUguUGACGCCCCUGUUCGg----UGA- -5'
28898 5' -54.3 NC_006146.1 + 44344 0.68 0.885106
Target:  5'- uUCUGCAcaggugGCUGaUGGGGACGAgguGCCAg- -3'
miRNA:   3'- uAGAUGU------UGAC-GCCCCUGUU---CGGUga -5'
28898 5' -54.3 NC_006146.1 + 123325 0.68 0.885106
Target:  5'- gGUgUGCAGCUGCuggaagagGGGGugAcgguuguaGGCCGCg -3'
miRNA:   3'- -UAgAUGUUGACG--------CCCCugU--------UCGGUGa -5'
28898 5' -54.3 NC_006146.1 + 135123 0.68 0.862882
Target:  5'- gGUUUGCucCgGCGGGGGguggcCGGGCCGCUg -3'
miRNA:   3'- -UAGAUGuuGaCGCCCCU-----GUUCGGUGA- -5'
28898 5' -54.3 NC_006146.1 + 60344 0.68 0.862882
Target:  5'- uGUCUACu-CUGCGGuGGGCA-GCCuCUu -3'
miRNA:   3'- -UAGAUGuuGACGCC-CCUGUuCGGuGA- -5'
28898 5' -54.3 NC_006146.1 + 2469 0.69 0.846971
Target:  5'- gGUCUuuGGCgguguggccgGCGGGGGCAGGCaGCUg -3'
miRNA:   3'- -UAGAugUUGa---------CGCCCCUGUUCGgUGA- -5'
28898 5' -54.3 NC_006146.1 + 60817 0.69 0.846971
Target:  5'- -aCUACAuaaGCaGGGACGAGCUGCUg -3'
miRNA:   3'- uaGAUGUugaCGcCCCUGUUCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.