miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 129248 0.67 0.944561
Target:  5'- gCCCAGGuGAGGcGCgaggguCAGGgauGUGGg -3'
miRNA:   3'- -GGGUCC-CUCCuCGau----GUUCau-CACCg -5'
28899 5' -54.2 NC_006146.1 + 101863 0.67 0.944561
Target:  5'- aCCAcGGGuGGcGggGCGAGgacGGUGGCg -3'
miRNA:   3'- gGGU-CCCuCCuCgaUGUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 108610 0.67 0.948915
Target:  5'- uCCCAGGuAGGGGUccGCGgaGGcGGUGGUg -3'
miRNA:   3'- -GGGUCCcUCCUCGa-UGU--UCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 150724 0.67 0.93997
Target:  5'- -aCAGGGuggacGGGGCUggacucgggGCGAGUGGacgGGCc -3'
miRNA:   3'- ggGUCCCu----CCUCGA---------UGUUCAUCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 132940 0.67 0.944561
Target:  5'- aCCCGcGGAGGGG--GgGGGUGGUGGa -3'
miRNA:   3'- -GGGUcCCUCCUCgaUgUUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 11043 0.67 0.948915
Target:  5'- aCCAGGGAGGuGUUugG-GUAcgacGGCu -3'
miRNA:   3'- gGGUCCCUCCuCGAugUuCAUca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 5200 0.67 0.930073
Target:  5'- uCCCuGGGccuggGGGAGCUAgGGGUGcaGGUc -3'
miRNA:   3'- -GGGuCCC-----UCCUCGAUgUUCAUcaCCG- -5'
28899 5' -54.2 NC_006146.1 + 53120 0.67 0.930073
Target:  5'- gCCCGGcccGGGGGAGCgcgACGGuugccuccucuGUGGcGGCg -3'
miRNA:   3'- -GGGUC---CCUCCUCGa--UGUU-----------CAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 155102 0.67 0.930073
Target:  5'- aUCAGGGAGGucAGgaACAccuucuGGUGG-GGCa -3'
miRNA:   3'- gGGUCCCUCC--UCgaUGU------UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 44124 0.67 0.93997
Target:  5'- gCCCGGcgaGGAGGGGggGCAGGacGUGcGCa -3'
miRNA:   3'- -GGGUC---CCUCCUCgaUGUUCauCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 160660 0.67 0.934146
Target:  5'- cCUCAGGGAGGccuucagGGCcgGCAcaugaccagggccGGUAGaGGCa -3'
miRNA:   3'- -GGGUCCCUCC-------UCGa-UGU-------------UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 140126 0.67 0.930073
Target:  5'- --gAGGGGGuGGCgg-AGGUGGUGGCg -3'
miRNA:   3'- gggUCCCUCcUCGaugUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 125619 0.68 0.9074
Target:  5'- aCCgAGGGuGGGGC-AUggGcUGGUGaGCg -3'
miRNA:   3'- -GGgUCCCuCCUCGaUGuuC-AUCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 9383 0.68 0.9074
Target:  5'- gCCAGGGuuuguGGAGgUGCAGGUacaccacaacagAGaGGCu -3'
miRNA:   3'- gGGUCCCu----CCUCgAUGUUCA------------UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 51828 0.68 0.9074
Target:  5'- cCCCGGGGcggcguggagGGGGGCU-CGGGgccUGGCc -3'
miRNA:   3'- -GGGUCCC----------UCCUCGAuGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 70535 0.68 0.9074
Target:  5'- aCCCAGGucGGAGg-GCG-GUGGUGGg -3'
miRNA:   3'- -GGGUCCcuCCUCgaUGUuCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 140058 0.68 0.901137
Target:  5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3'
miRNA:   3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 162013 0.68 0.9074
Target:  5'- aCCCuGGGAGaccGGCUcCAcGGUggAGUGGCa -3'
miRNA:   3'- -GGGuCCCUCc--UCGAuGU-UCA--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 51183 0.68 0.913427
Target:  5'- gCCGGGGAGGcuGCU-CGAGgaagcuGUGGa -3'
miRNA:   3'- gGGUCCCUCCu-CGAuGUUCau----CACCg -5'
28899 5' -54.2 NC_006146.1 + 2438 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.