miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 575 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 125619 0.68 0.9074
Target:  5'- aCCgAGGGuGGGGC-AUggGcUGGUGaGCg -3'
miRNA:   3'- -GGgUCCCuCCUCGaUGuuC-AUCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 9383 0.68 0.9074
Target:  5'- gCCAGGGuuuguGGAGgUGCAGGUacaccacaacagAGaGGCu -3'
miRNA:   3'- gGGUCCCu----CCUCgAUGUUCA------------UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 128813 0.68 0.924764
Target:  5'- -aCAGGGAGGGGCggcgGCAGagGG-GGUc -3'
miRNA:   3'- ggGUCCCUCCUCGa---UGUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 140058 0.68 0.901137
Target:  5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3'
miRNA:   3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 131521 0.68 0.924764
Target:  5'- gCCCAGGGuaaccGGGCgcCGAGUgggacguuuGGUGGUg -3'
miRNA:   3'- -GGGUCCCuc---CUCGauGUUCA---------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 58752 0.68 0.919215
Target:  5'- -aCGGGGAGGAGUUugaGCGGG-AGUacuaucGGCu -3'
miRNA:   3'- ggGUCCCUCCUCGA---UGUUCaUCA------CCG- -5'
28899 5' -54.2 NC_006146.1 + 51828 0.68 0.9074
Target:  5'- cCCCGGGGcggcguggagGGGGGCU-CGGGgccUGGCc -3'
miRNA:   3'- -GGGUCCC----------UCCUCGAuGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 70535 0.68 0.9074
Target:  5'- aCCCAGGucGGAGg-GCG-GUGGUGGg -3'
miRNA:   3'- -GGGUCCcuCCUCgaUGUuCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 51183 0.68 0.913427
Target:  5'- gCCGGGGAGGcuGCU-CGAGgaagcuGUGGa -3'
miRNA:   3'- gGGUCCCUCCu-CGAuGUUCau----CACCg -5'
28899 5' -54.2 NC_006146.1 + 73540 0.68 0.924764
Target:  5'- gCCAGGcuccGGAGCUccccggGCGGGUGguuGUGGCc -3'
miRNA:   3'- gGGUCCcu--CCUCGA------UGUUCAU---CACCG- -5'
28899 5' -54.2 NC_006146.1 + 20915 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 27070 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 17837 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 99047 0.69 0.887913
Target:  5'- cCCCAGGGcccGGcGGGUgucgGCGGugccGUAGUGGUg -3'
miRNA:   3'- -GGGUCCC---UC-CUCGa---UGUU----CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 167708 0.69 0.894641
Target:  5'- cCCCGGGGcccGAGCgcgcguCGGGUGG-GGCc -3'
miRNA:   3'- -GGGUCCCuc-CUCGau----GUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 139367 0.69 0.894641
Target:  5'- gCCGGGGGGGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- gGGUCCCUCCU-CG-AUGu----UCAUCa----CCG- -5'
28899 5' -54.2 NC_006146.1 + 10396 0.69 0.866389
Target:  5'- gCUCAGGGuGGugcuguGCUACAcGGUGGUGuuuGCg -3'
miRNA:   3'- -GGGUCCCuCCu-----CGAUGU-UCAUCAC---CG- -5'
28899 5' -54.2 NC_006146.1 + 14103 0.69 0.866389
Target:  5'- cCCCAGGGcgggaugucGGGGCUGCuGGcGGcGGCc -3'
miRNA:   3'- -GGGUCCCu--------CCUCGAUGuUCaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 115927 0.69 0.866389
Target:  5'- cCCCGGGuacGGGGGCaGCG-GUAGcGGCg -3'
miRNA:   3'- -GGGUCCc--UCCUCGaUGUuCAUCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.