Results 81 - 100 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 116496 | 0.69 | 0.880959 |
Target: 5'- aCCGcGGAGGAGCggcGCGAGgAGgcGGCa -3' miRNA: 3'- gGGUcCCUCCUCGa--UGUUCaUCa-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 108404 | 0.69 | 0.873783 |
Target: 5'- cCCCAGGGccAGGuGCUGCuGGcacgAGaacaUGGCg -3' miRNA: 3'- -GGGUCCC--UCCuCGAUGuUCa---UC----ACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 101669 | 0.69 | 0.873783 |
Target: 5'- gCCCuGGGGGGAaacggGCUACGGGc---GGCg -3' miRNA: 3'- -GGGuCCCUCCU-----CGAUGUUCaucaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 115927 | 0.69 | 0.866389 |
Target: 5'- cCCCGGGuacGGGGGCaGCG-GUAGcGGCg -3' miRNA: 3'- -GGGUCCc--UCCUCGaUGUuCAUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 14103 | 0.69 | 0.866389 |
Target: 5'- cCCCAGGGcgggaugucGGGGCUGCuGGcGGcGGCc -3' miRNA: 3'- -GGGUCCCu--------CCUCGAUGuUCaUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139367 | 0.69 | 0.894641 |
Target: 5'- gCCGGGGGGGGuGCcUGCuguuuAGUAGgagaaGGCc -3' miRNA: 3'- gGGUCCCUCCU-CG-AUGu----UCAUCa----CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 10396 | 0.69 | 0.866389 |
Target: 5'- gCUCAGGGuGGugcuguGCUACAcGGUGGUGuuuGCg -3' miRNA: 3'- -GGGUCCCuCCu-----CGAUGU-UCAUCAC---CG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 23992 | 0.69 | 0.858783 |
Target: 5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3' miRNA: 3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 165751 | 0.69 | 0.858783 |
Target: 5'- gUCAGGGAGGGGgaugggaaUAUggGUAgGUGGUu -3' miRNA: 3'- gGGUCCCUCCUCg-------AUGuuCAU-CACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 73680 | 0.69 | 0.864129 |
Target: 5'- cCCCAGcu-GGAGCUugGGGUGGUagaagacuuuggugGGCc -3' miRNA: 3'- -GGGUCccuCCUCGAugUUCAUCA--------------CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 99047 | 0.69 | 0.887913 |
Target: 5'- cCCCAGGGcccGGcGGGUgucgGCGGugccGUAGUGGUg -3' miRNA: 3'- -GGGUCCC---UC-CUCGa---UGUU----CAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 33329 | 0.69 | 0.880959 |
Target: 5'- cUCCGGGGuccGGGuGCUcCGGGgcagccgGGUGGCc -3' miRNA: 3'- -GGGUCCC---UCCuCGAuGUUCa------UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 145013 | 0.69 | 0.865637 |
Target: 5'- -gCAGGGAGGAGCUcuccaccACAAuGUucccgGGCa -3' miRNA: 3'- ggGUCCCUCCUCGA-------UGUU-CAuca--CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 169573 | 0.69 | 0.894641 |
Target: 5'- cCCCGGGGcccGAGCgcgcguCGGGUGG-GGCc -3' miRNA: 3'- -GGGUCCCuc-CUCGau----GUUCAUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 138108 | 0.69 | 0.866389 |
Target: 5'- gCCAaGGAGGuGCUGCGGGgauaGGCa -3' miRNA: 3'- gGGUcCCUCCuCGAUGUUCaucaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 149799 | 0.7 | 0.850971 |
Target: 5'- cUCCAGGGAgaugGGGGCcacaaACAGGcuccgGGUGGUg -3' miRNA: 3'- -GGGUCCCU----CCUCGa----UGUUCa----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 34492 | 0.7 | 0.850179 |
Target: 5'- --gAGGGAGGAGCUaagguccGCGAGauuuggGGUaGGCg -3' miRNA: 3'- gggUCCCUCCUCGA-------UGUUCa-----UCA-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139162 | 0.7 | 0.842961 |
Target: 5'- cCCCGGGGGGGcgccugugaggcGGCUguuguugucaaAgGGGcGGUGGCa -3' miRNA: 3'- -GGGUCCCUCC------------UCGA-----------UgUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 147088 | 0.7 | 0.826369 |
Target: 5'- gCCAGGGAGaGAGaaguggGCGAGcUGG-GGCu -3' miRNA: 3'- gGGUCCCUC-CUCga----UGUUC-AUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 39969 | 0.7 | 0.817803 |
Target: 5'- gCUGGGGaAGGAgaggcugaggcuGCUGCGGcccGUAGUGGCc -3' miRNA: 3'- gGGUCCC-UCCU------------CGAUGUU---CAUCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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