Results 101 - 120 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 89 | 0.7 | 0.850179 |
Target: 5'- uUCGGGGAGGGGCUucgucacGCAAG-GGUGa- -3' miRNA: 3'- gGGUCCCUCCUCGA-------UGUUCaUCACcg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 85475 | 0.7 | 0.834757 |
Target: 5'- cCCCAGaaGGaAGGGGCUGCAcaacGUGGacauaUGGCu -3' miRNA: 3'- -GGGUC--CC-UCCUCGAUGUu---CAUC-----ACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 149799 | 0.7 | 0.850971 |
Target: 5'- cUCCAGGGAgaugGGGGCcacaaACAGGcuccgGGUGGUg -3' miRNA: 3'- -GGGUCCCU----CCUCGa----UGUUCa----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 41060 | 0.7 | 0.817803 |
Target: 5'- uCCgAGGGcucgcucggacGGGGGCgugGCGGGUGGgccgcgGGCg -3' miRNA: 3'- -GGgUCCC-----------UCCUCGa--UGUUCAUCa-----CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 147088 | 0.7 | 0.826369 |
Target: 5'- gCCAGGGAGaGAGaaguggGCGAGcUGG-GGCu -3' miRNA: 3'- gGGUCCCUC-CUCga----UGUUC-AUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139162 | 0.7 | 0.842961 |
Target: 5'- cCCCGGGGGGGcgccugugaggcGGCUguuguugucaaAgGGGcGGUGGCa -3' miRNA: 3'- -GGGUCCCUCC------------UCGA-----------UgUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 34492 | 0.7 | 0.850179 |
Target: 5'- --gAGGGAGGAGCUaagguccGCGAGauuuggGGUaGGCg -3' miRNA: 3'- gggUCCCUCCUCGA-------UGUUCa-----UCA-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 136988 | 0.71 | 0.772599 |
Target: 5'- aCCGGaccGGAGGAGCUccaggACGggGGUAGgccgGGCa -3' miRNA: 3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 148520 | 0.71 | 0.799273 |
Target: 5'- gCCAGGGuGGAgagcaugcuGCUggccacugccaugAUggGUGGUGGCc -3' miRNA: 3'- gGGUCCCuCCU---------CGA-------------UGuuCAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 57350 | 0.71 | 0.799273 |
Target: 5'- cCCCGGGugucgguGAGGgaGGCUGCG-GcGGUGGCg -3' miRNA: 3'- -GGGUCC-------CUCC--UCGAUGUuCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 90085 | 0.71 | 0.809068 |
Target: 5'- -gCAGGGGGGAGC----AGUGGaGGCa -3' miRNA: 3'- ggGUCCCUCCUCGauguUCAUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139221 | 0.71 | 0.772599 |
Target: 5'- uUCUAGGGGuGAGCUGCu-GUGG-GGCu -3' miRNA: 3'- -GGGUCCCUcCUCGAUGuuCAUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 69251 | 0.71 | 0.809068 |
Target: 5'- aCCu-GGAGGAGCUGgAGGaGGUGGa -3' miRNA: 3'- gGGucCCUCCUCGAUgUUCaUCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 156847 | 0.71 | 0.800171 |
Target: 5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3' miRNA: 3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 153769 | 0.71 | 0.800171 |
Target: 5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3' miRNA: 3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 92839 | 0.71 | 0.772599 |
Target: 5'- aCCAGGGgguaAGGGGCU-Cu--UGGUGGCa -3' miRNA: 3'- gGGUCCC----UCCUCGAuGuucAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 144536 | 0.71 | 0.800171 |
Target: 5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3' miRNA: 3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 141458 | 0.71 | 0.800171 |
Target: 5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3' miRNA: 3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 95737 | 0.71 | 0.791121 |
Target: 5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3' miRNA: 3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 137175 | 0.71 | 0.772599 |
Target: 5'- aCCGGaccGGAGGAGCUccagaACGggGGUAGgccgGGCa -3' miRNA: 3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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