miRNA display CGI


Results 61 - 80 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 20915 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 17837 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 14759 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 165751 0.69 0.858783
Target:  5'- gUCAGGGAGGGGgaugggaaUAUggGUAgGUGGUu -3'
miRNA:   3'- gGGUCCCUCCUCg-------AUGuuCAU-CACCG- -5'
28899 5' -54.2 NC_006146.1 + 73680 0.69 0.864129
Target:  5'- cCCCAGcu-GGAGCUugGGGUGGUagaagacuuuggugGGCc -3'
miRNA:   3'- -GGGUCccuCCUCGAugUUCAUCA--------------CCG- -5'
28899 5' -54.2 NC_006146.1 + 145013 0.69 0.865637
Target:  5'- -gCAGGGAGGAGCUcuccaccACAAuGUucccgGGCa -3'
miRNA:   3'- ggGUCCCUCCUCGA-------UGUU-CAuca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 14103 0.69 0.866389
Target:  5'- cCCCAGGGcgggaugucGGGGCUGCuGGcGGcGGCc -3'
miRNA:   3'- -GGGUCCCu--------CCUCGAUGuUCaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 138108 0.69 0.866389
Target:  5'- gCCAaGGAGGuGCUGCGGGgauaGGCa -3'
miRNA:   3'- gGGUcCCUCCuCGAUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 10396 0.69 0.866389
Target:  5'- gCUCAGGGuGGugcuguGCUACAcGGUGGUGuuuGCg -3'
miRNA:   3'- -GGGUCCCuCCu-----CGAUGU-UCAUCAC---CG- -5'
28899 5' -54.2 NC_006146.1 + 115927 0.69 0.866389
Target:  5'- cCCCGGGuacGGGGGCaGCG-GUAGcGGCg -3'
miRNA:   3'- -GGGUCCc--UCCUCGaUGUuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 108404 0.69 0.873783
Target:  5'- cCCCAGGGccAGGuGCUGCuGGcacgAGaacaUGGCg -3'
miRNA:   3'- -GGGUCCC--UCCuCGAUGuUCa---UC----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 101669 0.69 0.873783
Target:  5'- gCCCuGGGGGGAaacggGCUACGGGc---GGCg -3'
miRNA:   3'- -GGGuCCCUCCU-----CGAUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 12633 0.69 0.880251
Target:  5'- aCCCGGGGcuGGGCca-GAGUccccccgAGUGGCu -3'
miRNA:   3'- -GGGUCCCucCUCGaugUUCA-------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 33329 0.69 0.880959
Target:  5'- cUCCGGGGuccGGGuGCUcCGGGgcagccgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCuCGAuGUUCa------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 116496 0.69 0.880959
Target:  5'- aCCGcGGAGGAGCggcGCGAGgAGgcGGCa -3'
miRNA:   3'- gGGUcCCUCCUCGa--UGUUCaUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 99047 0.69 0.887913
Target:  5'- cCCCAGGGcccGGcGGGUgucgGCGGugccGUAGUGGUg -3'
miRNA:   3'- -GGGUCCC---UC-CUCGa---UGUU----CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 139412 0.69 0.887913
Target:  5'- gCCgGGGGAGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- -GGgUCCCUCCuCG-AUGu----UCAUCa----CCG- -5'
28899 5' -54.2 NC_006146.1 + 75698 0.69 0.894641
Target:  5'- cUCCcuGGAGGAGCUGCAGcgcagGGaccUGGCc -3'
miRNA:   3'- -GGGucCCUCCUCGAUGUUca---UC---ACCG- -5'
28899 5' -54.2 NC_006146.1 + 49587 0.69 0.894641
Target:  5'- gCCAGGGuGGGGCU----GUGGaUGGUg -3'
miRNA:   3'- gGGUCCCuCCUCGAuguuCAUC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 139367 0.69 0.894641
Target:  5'- gCCGGGGGGGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- gGGUCCCUCCU-CG-AUGu----UCAUCa----CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.