miRNA display CGI


Results 121 - 140 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 11043 0.67 0.948915
Target:  5'- aCCAGGGAGGuGUUugG-GUAcgacGGCu -3'
miRNA:   3'- gGGUCCCUCCuCGAugUuCAUca--CCG- -5'
28899 5' -54.2 NC_006146.1 + 166780 0.67 0.948915
Target:  5'- aCCAGGaGGGGAGUUugAAa-AG-GGCa -3'
miRNA:   3'- gGGUCC-CUCCUCGAugUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 57614 0.67 0.948915
Target:  5'- uCCCGGuGGGGGccaagguGCUACAGGaaaAG-GGCc -3'
miRNA:   3'- -GGGUC-CCUCCu------CGAUGUUCa--UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 48317 0.66 0.953037
Target:  5'- aCCGucGGAGGuGCUGgcGGUGGUGGg -3'
miRNA:   3'- gGGUc-CCUCCuCGAUguUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 139457 0.66 0.953037
Target:  5'- gCCCGGGGGGGuGCcUGCAcuggAGaAGgucuccacGGCa -3'
miRNA:   3'- -GGGUCCCUCCuCG-AUGU----UCaUCa-------CCG- -5'
28899 5' -54.2 NC_006146.1 + 128195 0.66 0.956928
Target:  5'- gCCCAGGGGGGcGCcGCGGcgccgGGCc -3'
miRNA:   3'- -GGGUCCCUCCuCGaUGUUcaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 169360 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 168428 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 90031 0.66 0.960594
Target:  5'- -gCAGGGGGaAGCgguggaGCAGGaGGUGGUg -3'
miRNA:   3'- ggGUCCCUCcUCGa-----UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 167496 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 90648 0.66 0.960594
Target:  5'- ---uGGGAGGcGCcgcgGCGAG-GGUGGCa -3'
miRNA:   3'- ggguCCCUCCuCGa---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 170291 0.66 0.960594
Target:  5'- gCCUGGcGGGGGAGaggggGCAGGgc-UGGCg -3'
miRNA:   3'- -GGGUC-CCUCCUCga---UGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 112138 0.66 0.960594
Target:  5'- cCUCGGugcugacauuGGAGGuAGCguuggcgGCAuguGUGGUGGCa -3'
miRNA:   3'- -GGGUC----------CCUCC-UCGa------UGUu--CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 41135 0.66 0.962687
Target:  5'- cCCgGGGGAGGGGCgugcgcugacucugUGCAauaucgcaaucucGGUAGaUGGa -3'
miRNA:   3'- -GGgUCCCUCCUCG--------------AUGU-------------UCAUC-ACCg -5'
28899 5' -54.2 NC_006146.1 + 37391 0.66 0.963028
Target:  5'- uUCCAGacuguuauaaagacGGAGGGGCcgcggUGCAAGUAGccccGGUg -3'
miRNA:   3'- -GGGUC--------------CCUCCUCG-----AUGUUCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 52080 0.66 0.964038
Target:  5'- gCCAGGGAGGcgGGCauCAAGUucgaGGUGcuGCu -3'
miRNA:   3'- gGGUCCCUCC--UCGauGUUCA----UCAC--CG- -5'
28899 5' -54.2 NC_006146.1 + 33215 0.66 0.964038
Target:  5'- gCCGGaGGGGGAGC--CGGGaUGG-GGCu -3'
miRNA:   3'- gGGUC-CCUCCUCGauGUUC-AUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 60902 0.66 0.964038
Target:  5'- gCCCAGuGGAuccaGGAGCUguuucGCAccgcGGUGGaGGUa -3'
miRNA:   3'- -GGGUC-CCU----CCUCGA-----UGU----UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 51868 0.66 0.964038
Target:  5'- gCCCGGGGAuGGGGaugaaGAGgggagGGUGGa -3'
miRNA:   3'- -GGGUCCCU-CCUCgaug-UUCa----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 41354 0.66 0.964038
Target:  5'- gCCCAGGGccuGGC----GGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCuccUCGauguUCAUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.