miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 95737 0.71 0.791121
Target:  5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3'
miRNA:   3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5'
28899 5' -54.2 NC_006146.1 + 99047 0.69 0.887913
Target:  5'- cCCCAGGGcccGGcGGGUgucgGCGGugccGUAGUGGUg -3'
miRNA:   3'- -GGGUCCC---UC-CUCGa---UGUU----CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 101669 0.69 0.873783
Target:  5'- gCCCuGGGGGGAaacggGCUACGGGc---GGCg -3'
miRNA:   3'- -GGGuCCCUCCU-----CGAUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 101863 0.67 0.944561
Target:  5'- aCCAcGGGuGGcGggGCGAGgacGGUGGCg -3'
miRNA:   3'- gGGU-CCCuCCuCgaUGUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 101905 0.68 0.924764
Target:  5'- gCCCAGGucuGGAGCUGaAGGUuuugGGCu -3'
miRNA:   3'- -GGGUCCcu-CCUCGAUgUUCAuca-CCG- -5'
28899 5' -54.2 NC_006146.1 + 102749 0.81 0.279972
Target:  5'- gCCCGGGGAGGAGgcagccccuuucCUGCGuGgcGUGGCg -3'
miRNA:   3'- -GGGUCCCUCCUC------------GAUGUuCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 108404 0.69 0.873783
Target:  5'- cCCCAGGGccAGGuGCUGCuGGcacgAGaacaUGGCg -3'
miRNA:   3'- -GGGUCCC--UCCuCGAUGuUCa---UC----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 108610 0.67 0.948915
Target:  5'- uCCCAGGuAGGGGUccGCGgaGGcGGUGGUg -3'
miRNA:   3'- -GGGUCCcUCCUCGa-UGU--UCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 112108 0.73 0.673908
Target:  5'- gCUCGGGGGuGGAGgUgguGCuGGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCU-CCUCgA---UGuUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 112138 0.66 0.960594
Target:  5'- cCUCGGugcugacauuGGAGGuAGCguuggcgGCAuguGUGGUGGCa -3'
miRNA:   3'- -GGGUC----------CCUCC-UCGa------UGUu--CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 114249 0.76 0.541498
Target:  5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3'
miRNA:   3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 115927 0.69 0.866389
Target:  5'- cCCCGGGuacGGGGGCaGCG-GUAGcGGCg -3'
miRNA:   3'- -GGGUCCc--UCCUCGaUGUuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 116496 0.69 0.880959
Target:  5'- aCCGcGGAGGAGCggcGCGAGgAGgcGGCa -3'
miRNA:   3'- gGGUcCCUCCUCGa--UGUUCaUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 118433 0.66 0.967266
Target:  5'- uCCCuGGccGAGGuccugcacggcGGCUACAAcggGGUGGCc -3'
miRNA:   3'- -GGGuCC--CUCC-----------UCGAUGUUca-UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 125619 0.68 0.9074
Target:  5'- aCCgAGGGuGGGGC-AUggGcUGGUGaGCg -3'
miRNA:   3'- -GGgUCCCuCCUCGaUGuuC-AUCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 127092 0.68 0.919215
Target:  5'- gCCAGGGcGGAGC----GGUGGgacaGGCa -3'
miRNA:   3'- gGGUCCCuCCUCGauguUCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 128195 0.66 0.956928
Target:  5'- gCCCAGGGGGGcGCcGCGGcgccgGGCc -3'
miRNA:   3'- -GGGUCCCUCCuCGaUGUUcaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 128813 0.68 0.924764
Target:  5'- -aCAGGGAGGGGCggcgGCAGagGG-GGUc -3'
miRNA:   3'- ggGUCCCUCCUCGa---UGUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 129248 0.67 0.944561
Target:  5'- gCCCAGGuGAGGcGCgaggguCAGGgauGUGGg -3'
miRNA:   3'- -GGGUCC-CUCCuCGau----GUUCau-CACCg -5'
28899 5' -54.2 NC_006146.1 + 131521 0.68 0.924764
Target:  5'- gCCCAGGGuaaccGGGCgcCGAGUgggacguuuGGUGGUg -3'
miRNA:   3'- -GGGUCCCuc---CUCGauGUUCA---------UCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.