miRNA display CGI


Results 101 - 120 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 132940 0.67 0.944561
Target:  5'- aCCCGcGGAGGGG--GgGGGUGGUGGa -3'
miRNA:   3'- -GGGUcCCUCCUCgaUgUUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 135111 0.74 0.622701
Target:  5'- uCCCAGGGuuuGGGuuuGCUccgGCGGGgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCu--CGA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 136988 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccaggACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 137030 0.8 0.329197
Target:  5'- cCCCGGGGAGGAGgc-CGGGUGGgGGCc -3'
miRNA:   3'- -GGGUCCCUCCUCgauGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 137175 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccagaACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 137217 0.78 0.418791
Target:  5'- cCCCGGGGAGGaAGC--CGGGUGGgGGCc -3'
miRNA:   3'- -GGGUCCCUCC-UCGauGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 137348 0.66 0.970284
Target:  5'- aCCCccGGAGGAGCacCAGGgccaGGCa -3'
miRNA:   3'- -GGGucCCUCCUCGauGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 138108 0.69 0.866389
Target:  5'- gCCAaGGAGGuGCUGCGGGgauaGGCa -3'
miRNA:   3'- gGGUcCCUCCuCGAUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 138321 0.67 0.944112
Target:  5'- gUgGGGGAGGAGCUaagguccGCGAGauuUGG-GGUa -3'
miRNA:   3'- gGgUCCCUCCUCGA-------UGUUC---AUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 139162 0.7 0.842961
Target:  5'- cCCCGGGGGGGcgccugugaggcGGCUguuguugucaaAgGGGcGGUGGCa -3'
miRNA:   3'- -GGGUCCCUCC------------UCGA-----------UgUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 139221 0.71 0.772599
Target:  5'- uUCUAGGGGuGAGCUGCu-GUGG-GGCu -3'
miRNA:   3'- -GGGUCCCUcCUCGAUGuuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 139367 0.69 0.894641
Target:  5'- gCCGGGGGGGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- gGGUCCCUCCU-CG-AUGu----UCAUCa----CCG- -5'
28899 5' -54.2 NC_006146.1 + 139412 0.69 0.887913
Target:  5'- gCCgGGGGAGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- -GGgUCCCUCCuCG-AUGu----UCAUCa----CCG- -5'
28899 5' -54.2 NC_006146.1 + 139457 0.66 0.953037
Target:  5'- gCCCGGGGGGGuGCcUGCAcuggAGaAGgucuccacGGCa -3'
miRNA:   3'- -GGGUCCCUCCuCG-AUGU----UCaUCa-------CCG- -5'
28899 5' -54.2 NC_006146.1 + 140058 0.68 0.901137
Target:  5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3'
miRNA:   3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 140126 0.67 0.930073
Target:  5'- --gAGGGGGuGGCgg-AGGUGGUGGCg -3'
miRNA:   3'- gggUCCCUCcUCGaugUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 141437 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 141458 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 144515 0.76 0.531558
Target:  5'- gCCGGGGAGGGGUg--GGG-AGUGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGaugUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 144536 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.