miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 116496 0.69 0.880959
Target:  5'- aCCGcGGAGGAGCggcGCGAGgAGgcGGCa -3'
miRNA:   3'- gGGUcCCUCCUCGa--UGUUCaUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 115927 0.69 0.866389
Target:  5'- cCCCGGGuacGGGGGCaGCG-GUAGcGGCg -3'
miRNA:   3'- -GGGUCCc--UCCUCGaUGUuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 114249 0.76 0.541498
Target:  5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3'
miRNA:   3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 112138 0.66 0.960594
Target:  5'- cCUCGGugcugacauuGGAGGuAGCguuggcgGCAuguGUGGUGGCa -3'
miRNA:   3'- -GGGUC----------CCUCC-UCGa------UGUu--CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 112108 0.73 0.673908
Target:  5'- gCUCGGGGGuGGAGgUgguGCuGGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCU-CCUCgA---UGuUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 108610 0.67 0.948915
Target:  5'- uCCCAGGuAGGGGUccGCGgaGGcGGUGGUg -3'
miRNA:   3'- -GGGUCCcUCCUCGa-UGU--UCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 108404 0.69 0.873783
Target:  5'- cCCCAGGGccAGGuGCUGCuGGcacgAGaacaUGGCg -3'
miRNA:   3'- -GGGUCCC--UCCuCGAUGuUCa---UC----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 102749 0.81 0.279972
Target:  5'- gCCCGGGGAGGAGgcagccccuuucCUGCGuGgcGUGGCg -3'
miRNA:   3'- -GGGUCCCUCCUC------------GAUGUuCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 101905 0.68 0.924764
Target:  5'- gCCCAGGucuGGAGCUGaAGGUuuugGGCu -3'
miRNA:   3'- -GGGUCCcu-CCUCGAUgUUCAuca-CCG- -5'
28899 5' -54.2 NC_006146.1 + 101863 0.67 0.944561
Target:  5'- aCCAcGGGuGGcGggGCGAGgacGGUGGCg -3'
miRNA:   3'- gGGU-CCCuCCuCgaUGUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 101669 0.69 0.873783
Target:  5'- gCCCuGGGGGGAaacggGCUACGGGc---GGCg -3'
miRNA:   3'- -GGGuCCCUCCU-----CGAUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 99047 0.69 0.887913
Target:  5'- cCCCAGGGcccGGcGGGUgucgGCGGugccGUAGUGGUg -3'
miRNA:   3'- -GGGUCCC---UC-CUCGa---UGUU----CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 95737 0.71 0.791121
Target:  5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3'
miRNA:   3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5'
28899 5' -54.2 NC_006146.1 + 92839 0.71 0.772599
Target:  5'- aCCAGGGgguaAGGGGCU-Cu--UGGUGGCa -3'
miRNA:   3'- gGGUCCC----UCCUCGAuGuucAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 90648 0.66 0.960594
Target:  5'- ---uGGGAGGcGCcgcgGCGAG-GGUGGCa -3'
miRNA:   3'- ggguCCCUCCuCGa---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 90085 0.71 0.809068
Target:  5'- -gCAGGGGGGAGC----AGUGGaGGCa -3'
miRNA:   3'- ggGUCCCUCCUCGauguUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 90031 0.66 0.960594
Target:  5'- -gCAGGGGGaAGCgguggaGCAGGaGGUGGUg -3'
miRNA:   3'- ggGUCCCUCcUCGa-----UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 89063 0.7 0.817803
Target:  5'- gCCCGGGuauGGAGcCUGCuGGUGuuGUGGCc -3'
miRNA:   3'- -GGGUCCcu-CCUC-GAUGuUCAU--CACCG- -5'
28899 5' -54.2 NC_006146.1 + 88737 0.66 0.970284
Target:  5'- aUCCAGGuauGGAGgaUGCAGGggcucuuGUGGCu -3'
miRNA:   3'- -GGGUCCcu-CCUCg-AUGUUCau-----CACCG- -5'
28899 5' -54.2 NC_006146.1 + 87196 0.77 0.464121
Target:  5'- aCCCAGGGugagAGGAGg-ACAGGUGGcGGCc -3'
miRNA:   3'- -GGGUCCC----UCCUCgaUGUUCAUCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.