miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 85475 0.7 0.834757
Target:  5'- cCCCAGaaGGaAGGGGCUGCAcaacGUGGacauaUGGCu -3'
miRNA:   3'- -GGGUC--CC-UCCUCGAUGUu---CAUC-----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 76229 0.66 0.965355
Target:  5'- cCCCgaggugauuuuuguGGcGGAGGAugGCcagaaugugucaggUGCGGGUAGUGGUg -3'
miRNA:   3'- -GGG--------------UC-CCUCCU--CG--------------AUGUUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 75698 0.69 0.894641
Target:  5'- cUCCcuGGAGGAGCUGCAGcgcagGGaccUGGCc -3'
miRNA:   3'- -GGGucCCUCCUCGAUGUUca---UC---ACCG- -5'
28899 5' -54.2 NC_006146.1 + 74455 0.68 0.924764
Target:  5'- cCCCgAGGGAGcAGUggACAGGgGGUGGa -3'
miRNA:   3'- -GGG-UCCCUCcUCGa-UGUUCaUCACCg -5'
28899 5' -54.2 NC_006146.1 + 73680 0.69 0.864129
Target:  5'- cCCCAGcu-GGAGCUugGGGUGGUagaagacuuuggugGGCc -3'
miRNA:   3'- -GGGUCccuCCUCGAugUUCAUCA--------------CCG- -5'
28899 5' -54.2 NC_006146.1 + 73540 0.68 0.924764
Target:  5'- gCCAGGcuccGGAGCUccccggGCGGGUGguuGUGGCc -3'
miRNA:   3'- gGGUCCcu--CCUCGA------UGUUCAU---CACCG- -5'
28899 5' -54.2 NC_006146.1 + 70535 0.68 0.9074
Target:  5'- aCCCAGGucGGAGg-GCG-GUGGUGGg -3'
miRNA:   3'- -GGGUCCcuCCUCgaUGUuCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 69251 0.71 0.809068
Target:  5'- aCCu-GGAGGAGCUGgAGGaGGUGGa -3'
miRNA:   3'- gGGucCCUCCUCGAUgUUCaUCACCg -5'
28899 5' -54.2 NC_006146.1 + 64651 0.66 0.966953
Target:  5'- gCCGGGGccAGGGGC-ACGucgccguGGUAgGUGGUc -3'
miRNA:   3'- gGGUCCC--UCCUCGaUGU-------UCAU-CACCG- -5'
28899 5' -54.2 NC_006146.1 + 61353 0.67 0.938067
Target:  5'- uCUCaAGGGAGGAguGCUGCAGGUcaaccugcugucuGUGaGCu -3'
miRNA:   3'- -GGG-UCCCUCCU--CGAUGUUCAu------------CAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 60962 0.66 0.967266
Target:  5'- gCCCGGGGgugGGGGGUcACcuuGGUGGaUGuGCa -3'
miRNA:   3'- -GGGUCCC---UCCUCGaUGu--UCAUC-AC-CG- -5'
28899 5' -54.2 NC_006146.1 + 60902 0.66 0.964038
Target:  5'- gCCCAGuGGAuccaGGAGCUguuucGCAccgcGGUGGaGGUa -3'
miRNA:   3'- -GGGUC-CCU----CCUCGA-----UGU----UCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 59412 0.67 0.930073
Target:  5'- uCCCGGGuucaaGAGGAGCaaguaUGCcGGggGGUGGUu -3'
miRNA:   3'- -GGGUCC-----CUCCUCG-----AUGuUCa-UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 59118 0.72 0.72425
Target:  5'- gCCAGGGgaGGGAGCUAUAGGggacGGUuucucgcuGGCc -3'
miRNA:   3'- gGGUCCC--UCCUCGAUGUUCa---UCA--------CCG- -5'
28899 5' -54.2 NC_006146.1 + 58752 0.68 0.919215
Target:  5'- -aCGGGGAGGAGUUugaGCGGG-AGUacuaucGGCu -3'
miRNA:   3'- ggGUCCCUCCUCGA---UGUUCaUCA------CCG- -5'
28899 5' -54.2 NC_006146.1 + 57614 0.67 0.948915
Target:  5'- uCCCGGuGGGGGccaagguGCUACAGGaaaAG-GGCc -3'
miRNA:   3'- -GGGUC-CCUCCu------CGAUGUUCa--UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 57350 0.71 0.799273
Target:  5'- cCCCGGGugucgguGAGGgaGGCUGCG-GcGGUGGCg -3'
miRNA:   3'- -GGGUCC-------CUCC--UCGAUGUuCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 54892 0.72 0.72425
Target:  5'- aCCGGccGGAGGAGCUcuuuGCuGAGUaccgggAGUGGCa -3'
miRNA:   3'- gGGUC--CCUCCUCGA----UG-UUCA------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 53120 0.67 0.930073
Target:  5'- gCCCGGcccGGGGGAGCgcgACGGuugccuccucuGUGGcGGCg -3'
miRNA:   3'- -GGGUC---CCUCCUCGa--UGUU-----------CAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 52080 0.66 0.964038
Target:  5'- gCCAGGGAGGcgGGCauCAAGUucgaGGUGcuGCu -3'
miRNA:   3'- gGGUCCCUCC--UCGauGUUCA----UCAC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.