miRNA display CGI


Results 101 - 120 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 51868 0.66 0.964038
Target:  5'- gCCCGGGGAuGGGGaugaaGAGgggagGGUGGa -3'
miRNA:   3'- -GGGUCCCU-CCUCgaug-UUCa----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 51828 0.68 0.9074
Target:  5'- cCCCGGGGcggcguggagGGGGGCU-CGGGgccUGGCc -3'
miRNA:   3'- -GGGUCCC----------UCCUCGAuGUUCaucACCG- -5'
28899 5' -54.2 NC_006146.1 + 51183 0.68 0.913427
Target:  5'- gCCGGGGAGGcuGCU-CGAGgaagcuGUGGa -3'
miRNA:   3'- gGGUCCCUCCu-CGAuGUUCau----CACCg -5'
28899 5' -54.2 NC_006146.1 + 49791 0.68 0.924764
Target:  5'- uCUCAGG-AGGGGCaGgAAGaugGGUGGCu -3'
miRNA:   3'- -GGGUCCcUCCUCGaUgUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 49587 0.69 0.894641
Target:  5'- gCCAGGGuGGGGCU----GUGGaUGGUg -3'
miRNA:   3'- gGGUCCCuCCUCGAuguuCAUC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 48317 0.66 0.953037
Target:  5'- aCCGucGGAGGuGCUGgcGGUGGUGGg -3'
miRNA:   3'- gGGUc-CCUCCuCGAUguUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 44547 0.7 0.817803
Target:  5'- uCCUggaaaAGGGGccGGGGCUcCGGGUGGcUGGCg -3'
miRNA:   3'- -GGG-----UCCCU--CCUCGAuGUUCAUC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 44124 0.67 0.93997
Target:  5'- gCCCGGcgaGGAGGGGggGCAGGacGUGcGCa -3'
miRNA:   3'- -GGGUC---CCUCCUCgaUGUUCauCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 43627 0.73 0.704288
Target:  5'- --gAGGGAGuGGGCgGCGGGgcGUGGCc -3'
miRNA:   3'- gggUCCCUC-CUCGaUGUUCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 43341 0.71 0.763145
Target:  5'- gCCCAGGGccagcAGGcgcAGCccgugGCAGGgGGUGGCu -3'
miRNA:   3'- -GGGUCCC-----UCC---UCGa----UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 42292 0.66 0.967266
Target:  5'- -nCGGGGAGGAGgaGCGGGagccggAGUGcccuGCg -3'
miRNA:   3'- ggGUCCCUCCUCgaUGUUCa-----UCAC----CG- -5'
28899 5' -54.2 NC_006146.1 + 42263 0.8 0.329197
Target:  5'- cCCCGaaugcGGGAGGAGg-AUggGUGGUGGCg -3'
miRNA:   3'- -GGGU-----CCCUCCUCgaUGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 41354 0.66 0.964038
Target:  5'- gCCCAGGGccuGGC----GGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCuccUCGauguUCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 41135 0.66 0.962687
Target:  5'- cCCgGGGGAGGGGCgugcgcugacucugUGCAauaucgcaaucucGGUAGaUGGa -3'
miRNA:   3'- -GGgUCCCUCCUCG--------------AUGU-------------UCAUC-ACCg -5'
28899 5' -54.2 NC_006146.1 + 41060 0.7 0.817803
Target:  5'- uCCgAGGGcucgcucggacGGGGGCgugGCGGGUGGgccgcgGGCg -3'
miRNA:   3'- -GGgUCCC-----------UCCUCGa--UGUUCAUCa-----CCG- -5'
28899 5' -54.2 NC_006146.1 + 39969 0.7 0.817803
Target:  5'- gCUGGGGaAGGAgaggcugaggcuGCUGCGGcccGUAGUGGCc -3'
miRNA:   3'- gGGUCCC-UCCU------------CGAUGUU---CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 39873 0.66 0.967266
Target:  5'- cCCgGGGGAGGAgGCU--GAGgcugAGcGGCc -3'
miRNA:   3'- -GGgUCCCUCCU-CGAugUUCa---UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 37391 0.66 0.963028
Target:  5'- uUCCAGacuguuauaaagacGGAGGGGCcgcggUGCAAGUAGccccGGUg -3'
miRNA:   3'- -GGGUC--------------CCUCCUCG-----AUGUUCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 36235 0.7 0.842961
Target:  5'- gCCGGGGAGGAG--GCAGGgc--GGCu -3'
miRNA:   3'- gGGUCCCUCCUCgaUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 34492 0.7 0.850179
Target:  5'- --gAGGGAGGAGCUaagguccGCGAGauuuggGGUaGGCg -3'
miRNA:   3'- gggUCCCUCCUCGA-------UGUUCa-----UCA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.