miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 99047 0.69 0.887913
Target:  5'- cCCCAGGGcccGGcGGGUgucgGCGGugccGUAGUGGUg -3'
miRNA:   3'- -GGGUCCC---UC-CUCGa---UGUU----CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 57350 0.71 0.799273
Target:  5'- cCCCGGGugucgguGAGGgaGGCUGCG-GcGGUGGCg -3'
miRNA:   3'- -GGGUCC-------CUCC--UCGAUGUuCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 135111 0.74 0.622701
Target:  5'- uCCCAGGGuuuGGGuuuGCUccgGCGGGgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCu--CGA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 33329 0.69 0.880959
Target:  5'- cUCCGGGGuccGGGuGCUcCGGGgcagccgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCuCGAuGUUCa------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 114249 0.76 0.541498
Target:  5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3'
miRNA:   3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 166780 0.67 0.948915
Target:  5'- aCCAGGaGGGGAGUUugAAa-AG-GGCa -3'
miRNA:   3'- gGGUCC-CUCCUCGAugUUcaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 161714 0.73 0.673908
Target:  5'- cUCCuGGGAGaaGGCUugGGGgugGGUGGCa -3'
miRNA:   3'- -GGGuCCCUCc-UCGAugUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 166866 0.67 0.93997
Target:  5'- gCCCggcgggAGGGGGGAGCggaggGCGAGgAG-GaGCg -3'
miRNA:   3'- -GGG------UCCCUCCUCGa----UGUUCaUCaC-CG- -5'
28899 5' -54.2 NC_006146.1 + 167294 0.67 0.939498
Target:  5'- gCCGgcGGGAGGGGCcggcgccUGCAGGggGGgccGGCg -3'
miRNA:   3'- gGGU--CCCUCCUCG-------AUGUUCa-UCa--CCG- -5'
28899 5' -54.2 NC_006146.1 + 53120 0.67 0.930073
Target:  5'- gCCCGGcccGGGGGAGCgcgACGGuugccuccucuGUGGcGGCg -3'
miRNA:   3'- -GGGUC---CCUCCUCGa--UGUU-----------CAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 74455 0.68 0.924764
Target:  5'- cCCCgAGGGAGcAGUggACAGGgGGUGGa -3'
miRNA:   3'- -GGG-UCCCUCcUCGa-UGUUCaUCACCg -5'
28899 5' -54.2 NC_006146.1 + 51183 0.68 0.913427
Target:  5'- gCCGGGGAGGcuGCU-CGAGgaagcuGUGGa -3'
miRNA:   3'- gGGUCCCUCCu-CGAuGUUCau----CACCg -5'
28899 5' -54.2 NC_006146.1 + 169573 0.69 0.894641
Target:  5'- cCCCGGGGcccGAGCgcgcguCGGGUGG-GGCc -3'
miRNA:   3'- -GGGUCCCuc-CUCGau----GUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 165751 0.69 0.858783
Target:  5'- gUCAGGGAGGGGgaugggaaUAUggGUAgGUGGUu -3'
miRNA:   3'- gGGUCCCUCCUCg-------AUGuuCAU-CACCG- -5'
28899 5' -54.2 NC_006146.1 + 20915 0.69 0.858783
Target:  5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3'
miRNA:   3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 34492 0.7 0.850179
Target:  5'- --gAGGGAGGAGCUaagguccGCGAGauuuggGGUaGGCg -3'
miRNA:   3'- gggUCCCUCCUCGA-------UGUUCa-----UCA-CCG- -5'
28899 5' -54.2 NC_006146.1 + 41060 0.7 0.817803
Target:  5'- uCCgAGGGcucgcucggacGGGGGCgugGCGGGUGGgccgcgGGCg -3'
miRNA:   3'- -GGgUCCC-----------UCCUCGa--UGUUCAUCa-----CCG- -5'
28899 5' -54.2 NC_006146.1 + 12847 0.72 0.753573
Target:  5'- aCCCGaGGAGGcGCcugggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa----UGUUCa---UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 30925 0.72 0.72425
Target:  5'- gCCCAGGGGGGAGCccguUucGUGGgcGGUu -3'
miRNA:   3'- -GGGUCCCUCCUCGau--GuuCAUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 19003 0.73 0.704288
Target:  5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3'
miRNA:   3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.