Results 81 - 100 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 147614 | 0.71 | 0.800171 |
Target: 5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3' miRNA: 3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 69251 | 0.71 | 0.809068 |
Target: 5'- aCCu-GGAGGAGCUGgAGGaGGUGGa -3' miRNA: 3'- gGGucCCUCCUCGAUgUUCaUCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 153769 | 0.71 | 0.800171 |
Target: 5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3' miRNA: 3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 52080 | 0.66 | 0.964038 |
Target: 5'- gCCAGGGAGGcgGGCauCAAGUucgaGGUGcuGCu -3' miRNA: 3'- gGGUCCCUCC--UCGauGUUCA----UCAC--CG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 129248 | 0.67 | 0.944561 |
Target: 5'- gCCCAGGuGAGGcGCgaggguCAGGgauGUGGg -3' miRNA: 3'- -GGGUCC-CUCCuCGau----GUUCau-CACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 95737 | 0.71 | 0.791121 |
Target: 5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3' miRNA: 3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139367 | 0.69 | 0.894641 |
Target: 5'- gCCGGGGGGGGuGCcUGCuguuuAGUAGgagaaGGCc -3' miRNA: 3'- gGGUCCCUCCU-CG-AUGu----UCAUCa----CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 140058 | 0.68 | 0.901137 |
Target: 5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3' miRNA: 3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 70535 | 0.68 | 0.9074 |
Target: 5'- aCCCAGGucGGAGg-GCG-GUGGUGGg -3' miRNA: 3'- -GGGUCCcuCCUCgaUGUuCAUCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 125619 | 0.68 | 0.9074 |
Target: 5'- aCCgAGGGuGGGGC-AUggGcUGGUGaGCg -3' miRNA: 3'- -GGgUCCCuCCUCGaUGuuC-AUCAC-CG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 575 | 0.68 | 0.919215 |
Target: 5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3' miRNA: 3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 108610 | 0.67 | 0.948915 |
Target: 5'- uCCCAGGuAGGGGUccGCGgaGGcGGUGGUg -3' miRNA: 3'- -GGGUCCcUCCUCGa-UGU--UCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 162389 | 0.72 | 0.72425 |
Target: 5'- -aCGGGGgcuuugcccuGGGAGUaACAAGUGGUGGg -3' miRNA: 3'- ggGUCCC----------UCCUCGaUGUUCAUCACCg -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 54892 | 0.72 | 0.72425 |
Target: 5'- aCCGGccGGAGGAGCUcuuuGCuGAGUaccgggAGUGGCa -3' miRNA: 3'- gGGUC--CCUCCUCGA----UG-UUCA------UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 20593 | 0.72 | 0.75068 |
Target: 5'- gCCCGGGcGAGGA-CUACGAGUccuucaggcucaccGGgGGCa -3' miRNA: 3'- -GGGUCC-CUCCUcGAUGUUCA--------------UCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 9383 | 0.68 | 0.9074 |
Target: 5'- gCCAGGGuuuguGGAGgUGCAGGUacaccacaacagAGaGGCu -3' miRNA: 3'- gGGUCCCu----CCUCgAUGUUCA------------UCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139221 | 0.71 | 0.772599 |
Target: 5'- uUCUAGGGGuGAGCUGCu-GUGG-GGCu -3' miRNA: 3'- -GGGUCCCUcCUCGAUGuuCAUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 92839 | 0.71 | 0.772599 |
Target: 5'- aCCAGGGgguaAGGGGCU-Cu--UGGUGGCa -3' miRNA: 3'- gGGUCCC----UCCUCGAuGuucAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 136988 | 0.71 | 0.772599 |
Target: 5'- aCCGGaccGGAGGAGCUccaggACGggGGUAGgccgGGCa -3' miRNA: 3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 137175 | 0.71 | 0.772599 |
Target: 5'- aCCGGaccGGAGGAGCUccagaACGggGGUAGgccgGGCa -3' miRNA: 3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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