miRNA display CGI


Results 101 - 120 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 141458 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 95737 0.71 0.791121
Target:  5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3'
miRNA:   3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5'
28899 5' -54.2 NC_006146.1 + 162389 0.72 0.72425
Target:  5'- -aCGGGGgcuuugcccuGGGAGUaACAAGUGGUGGg -3'
miRNA:   3'- ggGUCCC----------UCCUCGaUGUUCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 54892 0.72 0.72425
Target:  5'- aCCGGccGGAGGAGCUcuuuGCuGAGUaccgggAGUGGCa -3'
miRNA:   3'- gGGUC--CCUCCUCGA----UG-UUCA------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 137175 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccagaACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 139221 0.71 0.772599
Target:  5'- uUCUAGGGGuGAGCUGCu-GUGG-GGCu -3'
miRNA:   3'- -GGGUCCCUcCUCGAUGuuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 44547 0.7 0.817803
Target:  5'- uCCUggaaaAGGGGccGGGGCUcCGGGUGGcUGGCg -3'
miRNA:   3'- -GGG-----UCCCU--CCUCGAuGUUCAUC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 89063 0.7 0.817803
Target:  5'- gCCCGGGuauGGAGcCUGCuGGUGuuGUGGCc -3'
miRNA:   3'- -GGGUCCcu-CCUC-GAUGuUCAU--CACCG- -5'
28899 5' -54.2 NC_006146.1 + 136988 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccaggACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 9383 0.68 0.9074
Target:  5'- gCCAGGGuuuguGGAGgUGCAGGUacaccacaacagAGaGGCu -3'
miRNA:   3'- gGGUCCCu----CCUCgAUGUUCA------------UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 70535 0.68 0.9074
Target:  5'- aCCCAGGucGGAGg-GCG-GUGGUGGg -3'
miRNA:   3'- -GGGUCCcuCCUCgaUGUuCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 140058 0.68 0.901137
Target:  5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3'
miRNA:   3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 139367 0.69 0.894641
Target:  5'- gCCGGGGGGGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- gGGUCCCUCCU-CG-AUGu----UCAUCa----CCG- -5'
28899 5' -54.2 NC_006146.1 + 115927 0.69 0.866389
Target:  5'- cCCCGGGuacGGGGGCaGCG-GUAGcGGCg -3'
miRNA:   3'- -GGGUCCc--UCCUCGaUGUuCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 14103 0.69 0.866389
Target:  5'- cCCCAGGGcgggaugucGGGGCUGCuGGcGGcGGCc -3'
miRNA:   3'- -GGGUCCCu--------CCUCGAUGuUCaUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 10396 0.69 0.866389
Target:  5'- gCUCAGGGuGGugcuguGCUACAcGGUGGUGuuuGCg -3'
miRNA:   3'- -GGGUCCCuCCu-----CGAUGU-UCAUCAC---CG- -5'
28899 5' -54.2 NC_006146.1 + 89 0.7 0.850179
Target:  5'- uUCGGGGAGGGGCUucgucacGCAAG-GGUGa- -3'
miRNA:   3'- gGGUCCCUCCUCGA-------UGUUCaUCACcg -5'
28899 5' -54.2 NC_006146.1 + 36235 0.7 0.842961
Target:  5'- gCCGGGGAGGAG--GCAGGgc--GGCu -3'
miRNA:   3'- gGGUCCCUCCUCgaUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 15026 0.7 0.834757
Target:  5'- gCCAGGGAGGGGCgccuggcCAGGgcccgccgGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGau-----GUUCauca----CCG- -5'
28899 5' -54.2 NC_006146.1 + 85475 0.7 0.834757
Target:  5'- cCCCAGaaGGaAGGGGCUGCAcaacGUGGacauaUGGCu -3'
miRNA:   3'- -GGGUC--CC-UCCUCGAUGUu---CAUC-----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.