miRNA display CGI


Results 121 - 140 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 87196 0.77 0.464121
Target:  5'- aCCCAGGGugagAGGAGg-ACAGGUGGcGGCc -3'
miRNA:   3'- -GGGUCCC----UCCUCgaUGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 137217 0.78 0.418791
Target:  5'- cCCCGGGGAGGaAGC--CGGGUGGgGGCc -3'
miRNA:   3'- -GGGUCCCUCC-UCGauGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 137030 0.8 0.329197
Target:  5'- cCCCGGGGAGGAGgc-CGGGUGGgGGCc -3'
miRNA:   3'- -GGGUCCCUCCUCgauGUUCAUCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 102749 0.81 0.279972
Target:  5'- gCCCGGGGAGGAGgcagccccuuucCUGCGuGgcGUGGCg -3'
miRNA:   3'- -GGGUCCCUCCUC------------GAUGUuCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 136988 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccaggACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 137175 0.71 0.772599
Target:  5'- aCCGGaccGGAGGAGCUccagaACGggGGUAGgccgGGCa -3'
miRNA:   3'- gGGUC---CCUCCUCGA-----UGU--UCAUCa---CCG- -5'
28899 5' -54.2 NC_006146.1 + 95737 0.71 0.791121
Target:  5'- gCCCAguGGGGGGGGCU---GGUGuUGGCc -3'
miRNA:   3'- -GGGU--CCCUCCUCGAuguUCAUcACCG- -5'
28899 5' -54.2 NC_006146.1 + 10396 0.69 0.866389
Target:  5'- gCUCAGGGuGGugcuguGCUACAcGGUGGUGuuuGCg -3'
miRNA:   3'- -GGGUCCCuCCu-----CGAUGU-UCAUCAC---CG- -5'
28899 5' -54.2 NC_006146.1 + 89 0.7 0.850179
Target:  5'- uUCGGGGAGGGGCUucgucacGCAAG-GGUGa- -3'
miRNA:   3'- gGGUCCCUCCUCGA-------UGUUCaUCACcg -5'
28899 5' -54.2 NC_006146.1 + 36235 0.7 0.842961
Target:  5'- gCCGGGGAGGAG--GCAGGgc--GGCu -3'
miRNA:   3'- gGGUCCCUCCUCgaUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 85475 0.7 0.834757
Target:  5'- cCCCAGaaGGaAGGGGCUGCAcaacGUGGacauaUGGCu -3'
miRNA:   3'- -GGGUC--CC-UCCUCGAUGUu---CAUC-----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 15026 0.7 0.834757
Target:  5'- gCCAGGGAGGGGCgccuggcCAGGgcccgccgGGCc -3'
miRNA:   3'- gGGUCCCUCCUCGau-----GUUCauca----CCG- -5'
28899 5' -54.2 NC_006146.1 + 89063 0.7 0.817803
Target:  5'- gCCCGGGuauGGAGcCUGCuGGUGuuGUGGCc -3'
miRNA:   3'- -GGGUCCcu-CCUC-GAUGuUCAU--CACCG- -5'
28899 5' -54.2 NC_006146.1 + 44547 0.7 0.817803
Target:  5'- uCCUggaaaAGGGGccGGGGCUcCGGGUGGcUGGCg -3'
miRNA:   3'- -GGG-----UCCCU--CCUCGAuGUUCAUC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 39969 0.7 0.817803
Target:  5'- gCUGGGGaAGGAgaggcugaggcuGCUGCGGcccGUAGUGGCc -3'
miRNA:   3'- gGGUCCC-UCCU------------CGAUGUU---CAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 69251 0.71 0.809068
Target:  5'- aCCu-GGAGGAGCUGgAGGaGGUGGa -3'
miRNA:   3'- gGGucCCUCCUCGAUgUUCaUCACCg -5'
28899 5' -54.2 NC_006146.1 + 156847 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 153769 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 147614 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5'
28899 5' -54.2 NC_006146.1 + 141458 0.71 0.800171
Target:  5'- nCCAGGGAGGAcggagggccugGcCUGCGGGggacagGGUGGa -3'
miRNA:   3'- gGGUCCCUCCU-----------C-GAUGUUCa-----UCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.