miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 5' -54.2 NC_006146.1 + 49587 0.69 0.894641
Target:  5'- gCCAGGGuGGGGCU----GUGGaUGGUg -3'
miRNA:   3'- gGGUCCCuCCUCGAuguuCAUC-ACCG- -5'
28899 5' -54.2 NC_006146.1 + 139412 0.69 0.887913
Target:  5'- gCCgGGGGAGGuGCcUGCuguuuAGUAGgagaaGGCc -3'
miRNA:   3'- -GGgUCCCUCCuCG-AUGu----UCAUCa----CCG- -5'
28899 5' -54.2 NC_006146.1 + 116496 0.69 0.880959
Target:  5'- aCCGcGGAGGAGCggcGCGAGgAGgcGGCa -3'
miRNA:   3'- gGGUcCCUCCUCGa--UGUUCaUCa-CCG- -5'
28899 5' -54.2 NC_006146.1 + 12633 0.69 0.880251
Target:  5'- aCCCGGGGcuGGGCca-GAGUccccccgAGUGGCu -3'
miRNA:   3'- -GGGUCCCucCUCGaugUUCA-------UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 108404 0.69 0.873783
Target:  5'- cCCCAGGGccAGGuGCUGCuGGcacgAGaacaUGGCg -3'
miRNA:   3'- -GGGUCCC--UCCuCGAUGuUCa---UC----ACCG- -5'
28899 5' -54.2 NC_006146.1 + 101669 0.69 0.873783
Target:  5'- gCCCuGGGGGGAaacggGCUACGGGc---GGCg -3'
miRNA:   3'- -GGGuCCCUCCU-----CGAUGUUCaucaCCG- -5'
28899 5' -54.2 NC_006146.1 + 140058 0.68 0.901137
Target:  5'- uUCUGGuGGAGGAGgUugaACAGGgGGUGGUg -3'
miRNA:   3'- -GGGUC-CCUCCUCgA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 70535 0.68 0.9074
Target:  5'- aCCCAGGucGGAGg-GCG-GUGGUGGg -3'
miRNA:   3'- -GGGUCCcuCCUCgaUGUuCAUCACCg -5'
28899 5' -54.2 NC_006146.1 + 73540 0.68 0.924764
Target:  5'- gCCAGGcuccGGAGCUccccggGCGGGUGguuGUGGCc -3'
miRNA:   3'- gGGUCCcu--CCUCGA------UGUUCAU---CACCG- -5'
28899 5' -54.2 NC_006146.1 + 49791 0.68 0.924764
Target:  5'- uCUCAGG-AGGGGCaGgAAGaugGGUGGCu -3'
miRNA:   3'- -GGGUCCcUCCUCGaUgUUCa--UCACCG- -5'
28899 5' -54.2 NC_006146.1 + 3370 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 2438 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 1506 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 575 0.68 0.919215
Target:  5'- uCCCAGGaGAGGGGCcg-GGGgcGcGGCc -3'
miRNA:   3'- -GGGUCC-CUCCUCGaugUUCauCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 125619 0.68 0.9074
Target:  5'- aCCgAGGGuGGGGC-AUggGcUGGUGaGCg -3'
miRNA:   3'- -GGgUCCCuCCUCGaUGuuC-AUCAC-CG- -5'
28899 5' -54.2 NC_006146.1 + 9383 0.68 0.9074
Target:  5'- gCCAGGGuuuguGGAGgUGCAGGUacaccacaacagAGaGGCu -3'
miRNA:   3'- gGGUCCCu----CCUCgAUGUUCA------------UCaCCG- -5'
28899 5' -54.2 NC_006146.1 + 169642 0.66 0.970284
Target:  5'- uCCCGuuGGcGGGGAGaaUACAgcuGGgcGUGGCg -3'
miRNA:   3'- -GGGU--CC-CUCCUCg-AUGU---UCauCACCG- -5'
28899 5' -54.2 NC_006146.1 + 114249 0.76 0.541498
Target:  5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3'
miRNA:   3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 135111 0.74 0.622701
Target:  5'- uCCCAGGGuuuGGGuuuGCUccgGCGGGgGGUGGCc -3'
miRNA:   3'- -GGGUCCC---UCCu--CGA---UGUUCaUCACCG- -5'
28899 5' -54.2 NC_006146.1 + 112108 0.73 0.673908
Target:  5'- gCUCGGGGGuGGAGgUgguGCuGGUGGUGGCc -3'
miRNA:   3'- -GGGUCCCU-CCUCgA---UGuUCAUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.