Results 81 - 100 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28899 | 5' | -54.2 | NC_006146.1 | + | 90085 | 0.71 | 0.809068 |
Target: 5'- -gCAGGGGGGAGC----AGUGGaGGCa -3' miRNA: 3'- ggGUCCCUCCUCGauguUCAUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 41060 | 0.7 | 0.817803 |
Target: 5'- uCCgAGGGcucgcucggacGGGGGCgugGCGGGUGGgccgcgGGCg -3' miRNA: 3'- -GGgUCCC-----------UCCUCGa--UGUUCAUCa-----CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 147088 | 0.7 | 0.826369 |
Target: 5'- gCCAGGGAGaGAGaaguggGCGAGcUGG-GGCu -3' miRNA: 3'- gGGUCCCUC-CUCga----UGUUC-AUCaCCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 139162 | 0.7 | 0.842961 |
Target: 5'- cCCCGGGGGGGcgccugugaggcGGCUguuguugucaaAgGGGcGGUGGCa -3' miRNA: 3'- -GGGUCCCUCC------------UCGA-----------UgUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 34492 | 0.7 | 0.850179 |
Target: 5'- --gAGGGAGGAGCUaagguccGCGAGauuuggGGUaGGCg -3' miRNA: 3'- gggUCCCUCCUCGA-------UGUUCa-----UCA-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 149799 | 0.7 | 0.850971 |
Target: 5'- cUCCAGGGAgaugGGGGCcacaaACAGGcuccgGGUGGUg -3' miRNA: 3'- -GGGUCCCU----CCUCGa----UGUUCa----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 14759 | 0.69 | 0.858783 |
Target: 5'- uUCUAGGGAGGGGgaccaCUGCccccuGGUauaaAGUGGCc -3' miRNA: 3'- -GGGUCCCUCCUC-----GAUGu----UCA----UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 30381 | 0.72 | 0.743894 |
Target: 5'- uCCCAGGGcuAGGuuuGCUGUAGGgccgccaGGUGGCg -3' miRNA: 3'- -GGGUCCC--UCCu--CGAUGUUCa------UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 59118 | 0.72 | 0.72425 |
Target: 5'- gCCAGGGgaGGGAGCUAUAGGggacGGUuucucgcuGGCc -3' miRNA: 3'- gGGUCCC--UCCUCGAUGUUCa---UCA--------CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 30925 | 0.72 | 0.72425 |
Target: 5'- gCCCAGGGGGGAGCccguUucGUGGgcGGUu -3' miRNA: 3'- -GGGUCCCUCCUCGau--GuuCAUCa-CCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 114249 | 0.76 | 0.541498 |
Target: 5'- cCUCAGGGAGG-GCcaGCucGUAGUGGUg -3' miRNA: 3'- -GGGUCCCUCCuCGa-UGuuCAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 135111 | 0.74 | 0.622701 |
Target: 5'- uCCCAGGGuuuGGGuuuGCUccgGCGGGgGGUGGCc -3' miRNA: 3'- -GGGUCCC---UCCu--CGA---UGUUCaUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 112108 | 0.73 | 0.673908 |
Target: 5'- gCUCGGGGGuGGAGgUgguGCuGGUGGUGGCc -3' miRNA: 3'- -GGGUCCCU-CCUCgA---UGuUCAUCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 161714 | 0.73 | 0.673908 |
Target: 5'- cUCCuGGGAGaaGGCUugGGGgugGGUGGCa -3' miRNA: 3'- -GGGuCCCUCc-UCGAugUUCa--UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 4953 | 0.73 | 0.704288 |
Target: 5'- cCCCGGGGAccaGGGGCcACGAG-AGccuccUGGCg -3' miRNA: 3'- -GGGUCCCU---CCUCGaUGUUCaUC-----ACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 15926 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 19003 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 22081 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 25159 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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28899 | 5' | -54.2 | NC_006146.1 | + | 28237 | 0.73 | 0.704288 |
Target: 5'- aCCCGaGGAGGcGCcuggGCGAGgcugGGUGGCu -3' miRNA: 3'- -GGGUcCCUCCuCGa---UGUUCa---UCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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