Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2890 | 3' | -59.7 | NC_001493.1 | + | 87639 | 0.67 | 0.642991 |
Target: 5'- cGUCgAGuCUUCgGaugacUCCGCCCgUGGAGCc -3' miRNA: 3'- aUAG-UC-GAAGgC-----AGGCGGGgGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 90136 | 0.7 | 0.457384 |
Target: 5'- --cCGGCcggUCCGUgCGCgaCCCCGGAGg -3' miRNA: 3'- auaGUCGa--AGGCAgGCG--GGGGCCUCg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 100803 | 0.66 | 0.703123 |
Target: 5'- --aCAGUgucgUUCCGgcgacaacccCCGCCCCCGaAGCu -3' miRNA: 3'- auaGUCG----AAGGCa---------GGCGGGGGCcUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 107610 | 0.67 | 0.662148 |
Target: 5'- gUGUCGGCUUCCGUUucaccguguguggUGCCgugaguugaUCCGGGGg -3' miRNA: 3'- -AUAGUCGAAGGCAG-------------GCGG---------GGGCCUCg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 109662 | 0.68 | 0.586547 |
Target: 5'- cGUCAGUgucugUCCGUaugucaacggucacaUCGCCCCgGGcGCg -3' miRNA: 3'- aUAGUCGa----AGGCA---------------GGCGGGGgCCuCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 109852 | 0.66 | 0.703123 |
Target: 5'- -uUCGGCc-UCGagCGCgCCCGGGGCg -3' miRNA: 3'- auAGUCGaaGGCagGCGgGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 120317 | 0.67 | 0.632892 |
Target: 5'- -cUCGGUUUCCacggGUCCGCCUCC--AGCu -3' miRNA: 3'- auAGUCGAAGG----CAGGCGGGGGccUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 124288 | 0.67 | 0.673204 |
Target: 5'- aAUUGGgUUaagaacaCGggUCGCCCCCGGGGCu -3' miRNA: 3'- aUAGUCgAAg------GCa-GGCGGGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 126772 | 0.66 | 0.692201 |
Target: 5'- gUGUgAGCgUCCGUCCcacgggucgucgaGCCCUCGGGa- -3' miRNA: 3'- -AUAgUCGaAGGCAGG-------------CGGGGGCCUcg -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 126872 | 0.71 | 0.404589 |
Target: 5'- gGUCAGa--UCGUCCGCCUCgGGGGUc -3' miRNA: 3'- aUAGUCgaaGGCAGGCGGGGgCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 130410 | 1.08 | 0.001201 |
Target: 5'- gUAUCAGCUUCCGUCCGCCCCCGGAGCc -3' miRNA: 3'- -AUAGUCGAAGGCAGGCGGGGGCCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 130490 | 0.74 | 0.304322 |
Target: 5'- cAUCAGCcagaacccggCgGUCCGCCCCaugGGGGCa -3' miRNA: 3'- aUAGUCGaa--------GgCAGGCGGGGg--CCUCG- -5' |
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2890 | 3' | -59.7 | NC_001493.1 | + | 133941 | 0.66 | 0.721814 |
Target: 5'- gGUCAGUUUgaaacccCCGUCCacgGCCa-CGGGGCg -3' miRNA: 3'- aUAGUCGAA-------GGCAGG---CGGggGCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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