Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2890 | 5' | -56.5 | NC_001493.1 | + | 14820 | 1.1 | 0.001789 |
Target: 5'- gACACUCCCGGGGGGUGCAGAAGAAACa -3' miRNA: 3'- -UGUGAGGGCCCCCCACGUCUUCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 130374 | 1.1 | 0.001789 |
Target: 5'- gACACUCCCGGGGGGUGCAGAAGAAACa -3' miRNA: 3'- -UGUGAGGGCCCCCCACGUCUUCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 9141 | 0.77 | 0.292898 |
Target: 5'- cGCGCUCCCGGGGauGGcgGCgagGGggGAGGCc -3' miRNA: 3'- -UGUGAGGGCCCC--CCa-CG---UCuuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 124696 | 0.77 | 0.292898 |
Target: 5'- cGCGCUCCCGGGGauGGcgGCgagGGggGAGGCc -3' miRNA: 3'- -UGUGAGGGCCCC--CCa-CG---UCuuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 65713 | 0.75 | 0.360164 |
Target: 5'- --uCUCUCGGGcGGGUGUggccAGAAGAAGCa -3' miRNA: 3'- uguGAGGGCCC-CCCACG----UCUUCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 124926 | 0.75 | 0.384018 |
Target: 5'- gACACUCCuCGGGGGGUaGCuccagguacacgaAGAcGGGACg -3' miRNA: 3'- -UGUGAGG-GCCCCCCA-CG-------------UCUuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 9372 | 0.75 | 0.384018 |
Target: 5'- gACACUCCuCGGGGGGUaGCuccagguacacgaAGAcGGGACg -3' miRNA: 3'- -UGUGAGG-GCCCCCCA-CG-------------UCUuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 87579 | 0.74 | 0.427528 |
Target: 5'- gGCGCUCauggguuCCGGGGGGgacacuacCGGAAGAGACc -3' miRNA: 3'- -UGUGAG-------GGCCCCCCac------GUCUUCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 107585 | 0.71 | 0.553636 |
Target: 5'- gACACcggUCCCGGGGGG-GUGGccGGAAUc -3' miRNA: 3'- -UGUG---AGGGCCCCCCaCGUCuuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 87831 | 0.71 | 0.58427 |
Target: 5'- uACGC-CCCGGGGGGUaggucCAGggGuAGAUc -3' miRNA: 3'- -UGUGaGGGCCCCCCAc----GUCuuC-UUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 121097 | 0.7 | 0.615221 |
Target: 5'- -gGCUCCCGGacuuGG-GCGGGAGGAGCg -3' miRNA: 3'- ugUGAGGGCCcc--CCaCGUCUUCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 5542 | 0.7 | 0.615221 |
Target: 5'- -gGCUCCCGGacuuGG-GCGGGAGGAGCg -3' miRNA: 3'- ugUGAGGGCCcc--CCaCGUCUUCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 52084 | 0.69 | 0.687507 |
Target: 5'- gAUACUCgCGGGGGGUGUuccGGguGuAGCu -3' miRNA: 3'- -UGUGAGgGCCCCCCACG---UCuuCuUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 87231 | 0.69 | 0.70787 |
Target: 5'- ----aCUCGGGGGGUccaacGCGGggGGGAUa -3' miRNA: 3'- ugugaGGGCCCCCCA-----CGUCuuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 19619 | 0.68 | 0.767078 |
Target: 5'- gACGCUCUccgaguguagugCGGGGGGUGacguGGggGCc -3' miRNA: 3'- -UGUGAGG------------GCCCCCCACgucuUCuuUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 120269 | 0.67 | 0.785932 |
Target: 5'- gGCACaCCCGGGGGccggcagcgGCGGggGucACc -3' miRNA: 3'- -UGUGaGGGCCCCCca-------CGUCuuCuuUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 31932 | 0.67 | 0.798797 |
Target: 5'- gAUACUCaaGGGGGGUGgAGAcccgcgcuccgugauGGAucgaGACg -3' miRNA: 3'- -UGUGAGggCCCCCCACgUCU---------------UCU----UUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 5309 | 0.67 | 0.804219 |
Target: 5'- cACGCUCggccccggugaCCGGGGGGcugGCGGguGAGu- -3' miRNA: 3'- -UGUGAG-----------GGCCCCCCa--CGUCuuCUUug -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 39983 | 0.67 | 0.804219 |
Target: 5'- -aACUCUguacugUGGGGGGUGguGu-GGAGCg -3' miRNA: 3'- ugUGAGG------GCCCCCCACguCuuCUUUG- -5' |
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2890 | 5' | -56.5 | NC_001493.1 | + | 120863 | 0.67 | 0.804219 |
Target: 5'- cACGCUCggccccggugaCCGGGGGGcugGCGGguGAGu- -3' miRNA: 3'- -UGUGAG-----------GGCCCCCCa--CGUCuuCUUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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