miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 115338 0.66 0.989568
Target:  5'- cCCGGaCUCGGuCAucGAGGCCuuccuggCCGGCGUGg -3'
miRNA:   3'- -GGCUaGAGUU-GU--CUCCGG-------GGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 44988 0.66 0.989568
Target:  5'- gCCGGacccuucUCUcCAGCucgguGAGGCCCCAcCGUc -3'
miRNA:   3'- -GGCU-------AGA-GUUGu----CUCCGGGGUuGUAc -5'
28900 3' -52.3 NC_006146.1 + 54914 0.66 0.988302
Target:  5'- gCCGGcCUucagggacCGGCAGuAGGCCUCGACGUc -3'
miRNA:   3'- -GGCUaGA--------GUUGUC-UCCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 54311 0.66 0.988302
Target:  5'- aUGAUUUCAggcuGCAccuuGGCCCCuACGUGg -3'
miRNA:   3'- gGCUAGAGU----UGUcu--CCGGGGuUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 8899 0.66 0.98676
Target:  5'- gCCGGUCUCc-CAGGGuGCCuauCCAcCGUGg -3'
miRNA:   3'- -GGCUAGAGuuGUCUC-CGG---GGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 5573 0.66 0.98676
Target:  5'- aUGAUUUCAACcgugcaauuccAGAGGCUCUAGCu-- -3'
miRNA:   3'- gGCUAGAGUUG-----------UCUCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 75804 0.66 0.98676
Target:  5'- -gGGUCUCGAuCAGgcccAGGUUCCAGCAa- -3'
miRNA:   3'- ggCUAGAGUU-GUC----UCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 101827 0.66 0.985066
Target:  5'- aCGAgUUCGGCGG-GGCCCgAGCGc- -3'
miRNA:   3'- gGCUaGAGUUGUCuCCGGGgUUGUac -5'
28900 3' -52.3 NC_006146.1 + 128001 0.66 0.985066
Target:  5'- gCCGG----GACAGAcGGCCCUAGCGUc -3'
miRNA:   3'- -GGCUagagUUGUCU-CCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 81941 0.66 0.985066
Target:  5'- -aGggUUCAA---AGGCCCCGGCGUGg -3'
miRNA:   3'- ggCuaGAGUUgucUCCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 65763 0.66 0.985066
Target:  5'- gCGGUCUCGuuagaGGAGGCCUCGcuGCu-- -3'
miRNA:   3'- gGCUAGAGUug---UCUCCGGGGU--UGuac -5'
28900 3' -52.3 NC_006146.1 + 40430 0.66 0.985066
Target:  5'- cCCGGgg-CGGCAGcGGCCCCGuagGCGg- -3'
miRNA:   3'- -GGCUagaGUUGUCuCCGGGGU---UGUac -5'
28900 3' -52.3 NC_006146.1 + 151056 0.66 0.983212
Target:  5'- aCGAUCUCcacGCuGAGGUCCCug-AUGa -3'
miRNA:   3'- gGCUAGAGu--UGuCUCCGGGGuugUAC- -5'
28900 3' -52.3 NC_006146.1 + 124145 0.67 0.981189
Target:  5'- gCGcgUUUGGCAGcauGGCCCCAAUGUa -3'
miRNA:   3'- gGCuaGAGUUGUCu--CCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 110167 0.67 0.981189
Target:  5'- gCgGAUCUCugucCAG-GGCCUCAGCGc- -3'
miRNA:   3'- -GgCUAGAGuu--GUCuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 116245 0.67 0.981189
Target:  5'- -aGGUCUaCGACGG-GGCCCCucCAa- -3'
miRNA:   3'- ggCUAGA-GUUGUCuCCGGGGuuGUac -5'
28900 3' -52.3 NC_006146.1 + 148943 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 145865 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 142787 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 152021 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.