miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 22883 1.1 0.00634
Target:  5'- gCCGAUCUCAACAGAGGCCCCAACAUGu -3'
miRNA:   3'- -GGCUAGAGUUGUCUCCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 102549 0.76 0.620312
Target:  5'- -gGAUCUCcACAGAGGCgUCCAGCAg- -3'
miRNA:   3'- ggCUAGAGuUGUCUCCG-GGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 99125 0.75 0.672162
Target:  5'- uCCGGccucaggcgUCUCcACAGGGGCUCCAGCGa- -3'
miRNA:   3'- -GGCU---------AGAGuUGUCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 3884 0.74 0.743067
Target:  5'- gCUGGUCUCGGC-GAGGCCCacCGACGa- -3'
miRNA:   3'- -GGCUAGAGUUGuCUCCGGG--GUUGUac -5'
28900 3' -52.3 NC_006146.1 + 152688 0.73 0.781597
Target:  5'- -aGGUCUCGA-AGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGUUgUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 115480 0.73 0.800072
Target:  5'- gCgGGUCUCAAC-GAGGCCgCGGCGg- -3'
miRNA:   3'- -GgCUAGAGUUGuCUCCGGgGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 116371 0.73 0.809079
Target:  5'- -aGAUCUCAA-GGAGGUCCCugAGCGUGc -3'
miRNA:   3'- ggCUAGAGUUgUCUCCGGGG--UUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 23454 0.72 0.826589
Target:  5'- cCCG-UCUCGGCcuacGAGGCCCUGGcCGUGg -3'
miRNA:   3'- -GGCuAGAGUUGu---CUCCGGGGUU-GUAC- -5'
28900 3' -52.3 NC_006146.1 + 115692 0.72 0.843371
Target:  5'- aCCGGUgUCGAUGGAGGCCaucuCGUGa -3'
miRNA:   3'- -GGCUAgAGUUGUCUCCGGgguuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 61278 0.72 0.851469
Target:  5'- gCUGGUCUC-ACGGGGGCCUgucGCGUGu -3'
miRNA:   3'- -GGCUAGAGuUGUCUCCGGGgu-UGUAC- -5'
28900 3' -52.3 NC_006146.1 + 49531 0.71 0.880321
Target:  5'- uCCGGgggCUCcucugggGGCGGAGGCcacgccggccaggCCCAGCAUGg -3'
miRNA:   3'- -GGCUa--GAG-------UUGUCUCCG-------------GGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 55230 0.71 0.881751
Target:  5'- aCCGGUCUCAGCuacaGCUCCAcCAUGa -3'
miRNA:   3'- -GGCUAGAGUUGucucCGGGGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 45410 0.71 0.881751
Target:  5'- gUCGGUgggcCAGCGcGAGGCCCCGGCcgGg -3'
miRNA:   3'- -GGCUAga--GUUGU-CUCCGGGGUUGuaC- -5'
28900 3' -52.3 NC_006146.1 + 100903 0.7 0.895544
Target:  5'- -gGGUCUCGGCcguGGGGuCCCCGAcCGUGc -3'
miRNA:   3'- ggCUAGAGUUGu--CUCC-GGGGUU-GUAC- -5'
28900 3' -52.3 NC_006146.1 + 71353 0.7 0.895544
Target:  5'- cCCGAUCUCugcccCGGGGGCUCgGACu-- -3'
miRNA:   3'- -GGCUAGAGuu---GUCUCCGGGgUUGuac -5'
28900 3' -52.3 NC_006146.1 + 146532 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 155765 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 149610 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 143454 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 112687 0.7 0.914451
Target:  5'- gUCGGUCUCGAUcucgGGucuGGCCCgCAGCAg- -3'
miRNA:   3'- -GGCUAGAGUUG----UCu--CCGGG-GUUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.