miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 155099 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 158178 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 152021 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 52397 0.67 0.974025
Target:  5'- uCCG-UCUCGAUgauGAuGGCCCCcGCGUa -3'
miRNA:   3'- -GGCuAGAGUUGu--CU-CCGGGGuUGUAc -5'
28900 3' -52.3 NC_006146.1 + 66530 0.67 0.971246
Target:  5'- gCCGcUgUCAAacagGGGGGCCCCGAUGUc -3'
miRNA:   3'- -GGCuAgAGUUg---UCUCCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 80067 0.68 0.96826
Target:  5'- gUGAUCUCGAacgcGGUCCCAGCAc- -3'
miRNA:   3'- gGCUAGAGUUgucuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 6449 0.68 0.96826
Target:  5'- -gGGUC-CAu--GGGGCCCCAACAa- -3'
miRNA:   3'- ggCUAGaGUuguCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 61200 0.68 0.96506
Target:  5'- aCGGUCaUGGCGGAGcucuGCCCCGAUcgGg -3'
miRNA:   3'- gGCUAGaGUUGUCUC----CGGGGUUGuaC- -5'
28900 3' -52.3 NC_006146.1 + 114122 0.68 0.96506
Target:  5'- gCCGcgCUCAccgaGGAGGCCUgcGCGUGc -3'
miRNA:   3'- -GGCuaGAGUug--UCUCCGGGguUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 155202 0.68 0.96164
Target:  5'- ----cCUCGGcCAGuGGCCCCGugAUGa -3'
miRNA:   3'- ggcuaGAGUU-GUCuCCGGGGUugUAC- -5'
28900 3' -52.3 NC_006146.1 + 72386 0.68 0.96164
Target:  5'- cCCGAg-UCGGguGGGGCCCCucCAUc -3'
miRNA:   3'- -GGCUagAGUUguCUCCGGGGuuGUAc -5'
28900 3' -52.3 NC_006146.1 + 159878 0.68 0.957995
Target:  5'- cCUGGUCUCcucGCAGAGGgCCUCGagGCcgGg -3'
miRNA:   3'- -GGCUAGAGu--UGUCUCC-GGGGU--UGuaC- -5'
28900 3' -52.3 NC_006146.1 + 6591 0.68 0.95412
Target:  5'- cCCGAcaacagcaaCGGCAGuGGCCCCGGCGg- -3'
miRNA:   3'- -GGCUaga------GUUGUCuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 55781 0.68 0.95412
Target:  5'- gCUGcgCaaCAACAGGGGCCUCuauAACAUGg -3'
miRNA:   3'- -GGCuaGa-GUUGUCUCCGGGG---UUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 78127 0.68 0.95412
Target:  5'- cCUGAga--GGCAGAGGCCCCuuCAc- -3'
miRNA:   3'- -GGCUagagUUGUCUCCGGGGuuGUac -5'
28900 3' -52.3 NC_006146.1 + 109697 0.69 0.941073
Target:  5'- cCCGAUCggGGCAGA-GCUCCGcCAUGa -3'
miRNA:   3'- -GGCUAGagUUGUCUcCGGGGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 130011 0.69 0.941073
Target:  5'- cCCgGAUCgcaGAC-GAGGCCCCGGCu-- -3'
miRNA:   3'- -GG-CUAGag-UUGuCUCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 167886 0.69 0.941073
Target:  5'- gUGAgguugCUCcaggGAUGGAaaGGCCCCAGCAUGa -3'
miRNA:   3'- gGCUa----GAG----UUGUCU--CCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 44491 0.69 0.934742
Target:  5'- gCC-AUCUCGuucgcggagagggcGCAGAGGCCCCug-GUGg -3'
miRNA:   3'- -GGcUAGAGU--------------UGUCUCCGGGGuugUAC- -5'
28900 3' -52.3 NC_006146.1 + 50608 0.69 0.925837
Target:  5'- cCCGcAUCUUGAcCAGGGGCUCCgAGCAc- -3'
miRNA:   3'- -GGC-UAGAGUU-GUCUCCGGGG-UUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.