miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 3884 0.74 0.743067
Target:  5'- gCUGGUCUCGGC-GAGGCCCacCGACGa- -3'
miRNA:   3'- -GGCUAGAGUUGuCUCCGGG--GUUGUac -5'
28900 3' -52.3 NC_006146.1 + 5573 0.66 0.98676
Target:  5'- aUGAUUUCAACcgugcaauuccAGAGGCUCUAGCu-- -3'
miRNA:   3'- gGCUAGAGUUG-----------UCUCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 6449 0.68 0.96826
Target:  5'- -gGGUC-CAu--GGGGCCCCAACAa- -3'
miRNA:   3'- ggCUAGaGUuguCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 6591 0.68 0.95412
Target:  5'- cCCGAcaacagcaaCGGCAGuGGCCCCGGCGg- -3'
miRNA:   3'- -GGCUaga------GUUGUCuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 8899 0.66 0.98676
Target:  5'- gCCGGUCUCc-CAGGGuGCCuauCCAcCGUGg -3'
miRNA:   3'- -GGCUAGAGuuGUCUC-CGG---GGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 22883 1.1 0.00634
Target:  5'- gCCGAUCUCAACAGAGGCCCCAACAUGu -3'
miRNA:   3'- -GGCUAGAGUUGUCUCCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 23454 0.72 0.826589
Target:  5'- cCCG-UCUCGGCcuacGAGGCCCUGGcCGUGg -3'
miRNA:   3'- -GGCuAGAGUUGu---CUCCGGGGUU-GUAC- -5'
28900 3' -52.3 NC_006146.1 + 40430 0.66 0.985066
Target:  5'- cCCGGgg-CGGCAGcGGCCCCGuagGCGg- -3'
miRNA:   3'- -GGCUagaGUUGUCuCCGGGGU---UGUac -5'
28900 3' -52.3 NC_006146.1 + 44491 0.69 0.934742
Target:  5'- gCC-AUCUCGuucgcggagagggcGCAGAGGCCCCug-GUGg -3'
miRNA:   3'- -GGcUAGAGU--------------UGUCUCCGGGGuugUAC- -5'
28900 3' -52.3 NC_006146.1 + 44988 0.66 0.989568
Target:  5'- gCCGGacccuucUCUcCAGCucgguGAGGCCCCAcCGUc -3'
miRNA:   3'- -GGCU-------AGA-GUUGu----CUCCGGGGUuGUAc -5'
28900 3' -52.3 NC_006146.1 + 45410 0.71 0.881751
Target:  5'- gUCGGUgggcCAGCGcGAGGCCCCGGCcgGg -3'
miRNA:   3'- -GGCUAga--GUUGU-CUCCGGGGUUGuaC- -5'
28900 3' -52.3 NC_006146.1 + 49531 0.71 0.880321
Target:  5'- uCCGGgggCUCcucugggGGCGGAGGCcacgccggccaggCCCAGCAUGg -3'
miRNA:   3'- -GGCUa--GAG-------UUGUCUCCG-------------GGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 50608 0.69 0.925837
Target:  5'- cCCGcAUCUUGAcCAGGGGCUCCgAGCAc- -3'
miRNA:   3'- -GGC-UAGAGUU-GUCUCCGGGG-UUGUac -5'
28900 3' -52.3 NC_006146.1 + 52397 0.67 0.974025
Target:  5'- uCCG-UCUCGAUgauGAuGGCCCCcGCGUa -3'
miRNA:   3'- -GGCuAGAGUUGu--CU-CCGGGGuUGUAc -5'
28900 3' -52.3 NC_006146.1 + 54311 0.66 0.988302
Target:  5'- aUGAUUUCAggcuGCAccuuGGCCCCuACGUGg -3'
miRNA:   3'- gGCUAGAGU----UGUcu--CCGGGGuUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 54914 0.66 0.988302
Target:  5'- gCCGGcCUucagggacCGGCAGuAGGCCUCGACGUc -3'
miRNA:   3'- -GGCUaGA--------GUUGUC-UCCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 55230 0.71 0.881751
Target:  5'- aCCGGUCUCAGCuacaGCUCCAcCAUGa -3'
miRNA:   3'- -GGCUAGAGUUGucucCGGGGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 55781 0.68 0.95412
Target:  5'- gCUGcgCaaCAACAGGGGCCUCuauAACAUGg -3'
miRNA:   3'- -GGCuaGa-GUUGUCUCCGGGG---UUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 61200 0.68 0.96506
Target:  5'- aCGGUCaUGGCGGAGcucuGCCCCGAUcgGg -3'
miRNA:   3'- gGCUAGaGUUGUCUC----CGGGGUUGuaC- -5'
28900 3' -52.3 NC_006146.1 + 61278 0.72 0.851469
Target:  5'- gCUGGUCUC-ACGGGGGCCUgucGCGUGu -3'
miRNA:   3'- -GGCUAGAGuUGUCUCCGGGgu-UGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.