miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 167886 0.69 0.941073
Target:  5'- gUGAgguugCUCcaggGAUGGAaaGGCCCCAGCAUGa -3'
miRNA:   3'- gGCUa----GAG----UUGUCU--CCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 159878 0.68 0.957995
Target:  5'- cCUGGUCUCcucGCAGAGGgCCUCGagGCcgGg -3'
miRNA:   3'- -GGCUAGAGu--UGUCUCC-GGGGU--UGuaC- -5'
28900 3' -52.3 NC_006146.1 + 158178 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 155765 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 155202 0.68 0.96164
Target:  5'- ----cCUCGGcCAGuGGCCCCGugAUGa -3'
miRNA:   3'- ggcuaGAGUU-GUCuCCGGGGUugUAC- -5'
28900 3' -52.3 NC_006146.1 + 155099 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 152688 0.73 0.781597
Target:  5'- -aGGUCUCGA-AGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGUUgUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 152021 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 151056 0.66 0.983212
Target:  5'- aCGAUCUCcacGCuGAGGUCCCug-AUGa -3'
miRNA:   3'- gGCUAGAGu--UGuCUCCGGGGuugUAC- -5'
28900 3' -52.3 NC_006146.1 + 149610 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 148943 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 146532 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 145865 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 143454 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 142787 0.67 0.978988
Target:  5'- gCUGGUCUCGcuuGCu--GGCCCCAAUg-- -3'
miRNA:   3'- -GGCUAGAGU---UGucuCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 130011 0.69 0.941073
Target:  5'- cCCgGAUCgcaGAC-GAGGCCCCGGCu-- -3'
miRNA:   3'- -GG-CUAGag-UUGuCUCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 128001 0.66 0.985066
Target:  5'- gCCGG----GACAGAcGGCCCUAGCGUc -3'
miRNA:   3'- -GGCUagagUUGUCU-CCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 124145 0.67 0.981189
Target:  5'- gCGcgUUUGGCAGcauGGCCCCAAUGUa -3'
miRNA:   3'- gGCuaGAGUUGUCu--CCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 116371 0.73 0.809079
Target:  5'- -aGAUCUCAA-GGAGGUCCCugAGCGUGc -3'
miRNA:   3'- ggCUAGAGUUgUCUCCGGGG--UUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 116245 0.67 0.981189
Target:  5'- -aGGUCUaCGACGG-GGCCCCucCAa- -3'
miRNA:   3'- ggCUAGA-GUUGUCuCCGGGGuuGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.