miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 115692 0.72 0.843371
Target:  5'- aCCGGUgUCGAUGGAGGCCaucuCGUGa -3'
miRNA:   3'- -GGCUAgAGUUGUCUCCGGgguuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 115480 0.73 0.800072
Target:  5'- gCgGGUCUCAAC-GAGGCCgCGGCGg- -3'
miRNA:   3'- -GgCUAGAGUUGuCUCCGGgGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 115338 0.66 0.989568
Target:  5'- cCCGGaCUCGGuCAucGAGGCCuuccuggCCGGCGUGg -3'
miRNA:   3'- -GGCUaGAGUU-GU--CUCCGG-------GGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 114122 0.68 0.96506
Target:  5'- gCCGcgCUCAccgaGGAGGCCUgcGCGUGc -3'
miRNA:   3'- -GGCuaGAGUug--UCUCCGGGguUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 112687 0.7 0.914451
Target:  5'- gUCGGUCUCGAUcucgGGucuGGCCCgCAGCAg- -3'
miRNA:   3'- -GGCUAGAGUUG----UCu--CCGGG-GUUGUac -5'
28900 3' -52.3 NC_006146.1 + 110167 0.67 0.981189
Target:  5'- gCgGAUCUCugucCAG-GGCCUCAGCGc- -3'
miRNA:   3'- -GgCUAGAGuu--GUCuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 109697 0.69 0.941073
Target:  5'- cCCGAUCggGGCAGA-GCUCCGcCAUGa -3'
miRNA:   3'- -GGCUAGagUUGUCUcCGGGGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 102549 0.76 0.620312
Target:  5'- -gGAUCUCcACAGAGGCgUCCAGCAg- -3'
miRNA:   3'- ggCUAGAGuUGUCUCCG-GGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 101827 0.66 0.985066
Target:  5'- aCGAgUUCGGCGG-GGCCCgAGCGc- -3'
miRNA:   3'- gGCUaGAGUUGUCuCCGGGgUUGUac -5'
28900 3' -52.3 NC_006146.1 + 100903 0.7 0.895544
Target:  5'- -gGGUCUCGGCcguGGGGuCCCCGAcCGUGc -3'
miRNA:   3'- ggCUAGAGUUGu--CUCC-GGGGUU-GUAC- -5'
28900 3' -52.3 NC_006146.1 + 99125 0.75 0.672162
Target:  5'- uCCGGccucaggcgUCUCcACAGGGGCUCCAGCGa- -3'
miRNA:   3'- -GGCU---------AGAGuUGUCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 81941 0.66 0.985066
Target:  5'- -aGggUUCAA---AGGCCCCGGCGUGg -3'
miRNA:   3'- ggCuaGAGUUgucUCCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 80067 0.68 0.96826
Target:  5'- gUGAUCUCGAacgcGGUCCCAGCAc- -3'
miRNA:   3'- gGCUAGAGUUgucuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 78127 0.68 0.95412
Target:  5'- cCUGAga--GGCAGAGGCCCCuuCAc- -3'
miRNA:   3'- -GGCUagagUUGUCUCCGGGGuuGUac -5'
28900 3' -52.3 NC_006146.1 + 77753 0.7 0.920267
Target:  5'- cCCGGauagugCcGCAGAGGCCCUAGCGa- -3'
miRNA:   3'- -GGCUaga---GuUGUCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 75804 0.66 0.98676
Target:  5'- -gGGUCUCGAuCAGgcccAGGUUCCAGCAa- -3'
miRNA:   3'- ggCUAGAGUU-GUC----UCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 75486 0.67 0.978988
Target:  5'- aCGGggaCGGCGGGGGCCggcaagagcaCCAGCGUGa -3'
miRNA:   3'- gGCUagaGUUGUCUCCGG----------GGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 72386 0.68 0.96164
Target:  5'- cCCGAg-UCGGguGGGGCCCCucCAUc -3'
miRNA:   3'- -GGCUagAGUUguCUCCGGGGuuGUAc -5'
28900 3' -52.3 NC_006146.1 + 71353 0.7 0.895544
Target:  5'- cCCGAUCUCugcccCGGGGGCUCgGACu-- -3'
miRNA:   3'- -GGCUAGAGuu---GUCUCCGGGgUUGuac -5'
28900 3' -52.3 NC_006146.1 + 66530 0.67 0.971246
Target:  5'- gCCGcUgUCAAacagGGGGGCCCCGAUGUc -3'
miRNA:   3'- -GGCuAgAGUUg---UCUCCGGGGUUGUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.