miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 102549 0.76 0.620312
Target:  5'- -gGAUCUCcACAGAGGCgUCCAGCAg- -3'
miRNA:   3'- ggCUAGAGuUGUCUCCG-GGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 124145 0.67 0.981189
Target:  5'- gCGcgUUUGGCAGcauGGCCCCAAUGUa -3'
miRNA:   3'- gGCuaGAGUUGUCu--CCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 65763 0.66 0.985066
Target:  5'- gCGGUCUCGuuagaGGAGGCCUCGcuGCu-- -3'
miRNA:   3'- gGCUAGAGUug---UCUCCGGGGU--UGuac -5'
28900 3' -52.3 NC_006146.1 + 44988 0.66 0.989568
Target:  5'- gCCGGacccuucUCUcCAGCucgguGAGGCCCCAcCGUc -3'
miRNA:   3'- -GGCU-------AGA-GUUGu----CUCCGGGGUuGUAc -5'
28900 3' -52.3 NC_006146.1 + 115692 0.72 0.843371
Target:  5'- aCCGGUgUCGAUGGAGGCCaucuCGUGa -3'
miRNA:   3'- -GGCUAgAGUUGUCUCCGGgguuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 49531 0.71 0.880321
Target:  5'- uCCGGgggCUCcucugggGGCGGAGGCcacgccggccaggCCCAGCAUGg -3'
miRNA:   3'- -GGCUa--GAG-------UUGUCUCCG-------------GGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 100903 0.7 0.895544
Target:  5'- -gGGUCUCGGCcguGGGGuCCCCGAcCGUGc -3'
miRNA:   3'- ggCUAGAGUUGu--CUCC-GGGGUU-GUAC- -5'
28900 3' -52.3 NC_006146.1 + 77753 0.7 0.920267
Target:  5'- cCCGGauagugCcGCAGAGGCCCUAGCGa- -3'
miRNA:   3'- -GGCUaga---GuUGUCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 159878 0.68 0.957995
Target:  5'- cCUGGUCUCcucGCAGAGGgCCUCGagGCcgGg -3'
miRNA:   3'- -GGCUAGAGu--UGUCUCC-GGGGU--UGuaC- -5'
28900 3' -52.3 NC_006146.1 + 110167 0.67 0.981189
Target:  5'- gCgGAUCUCugucCAG-GGCCUCAGCGc- -3'
miRNA:   3'- -GgCUAGAGuu--GUCuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 80067 0.68 0.96826
Target:  5'- gUGAUCUCGAacgcGGUCCCAGCAc- -3'
miRNA:   3'- gGCUAGAGUUgucuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 130011 0.69 0.941073
Target:  5'- cCCgGAUCgcaGAC-GAGGCCCCGGCu-- -3'
miRNA:   3'- -GG-CUAGag-UUGuCUCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 99125 0.75 0.672162
Target:  5'- uCCGGccucaggcgUCUCcACAGGGGCUCCAGCGa- -3'
miRNA:   3'- -GGCU---------AGAGuUGUCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 66530 0.67 0.971246
Target:  5'- gCCGcUgUCAAacagGGGGGCCCCGAUGUc -3'
miRNA:   3'- -GGCuAgAGUUg---UCUCCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 3884 0.74 0.743067
Target:  5'- gCUGGUCUCGGC-GAGGCCCacCGACGa- -3'
miRNA:   3'- -GGCUAGAGUUGuCUCCGGG--GUUGUac -5'
28900 3' -52.3 NC_006146.1 + 109697 0.69 0.941073
Target:  5'- cCCGAUCggGGCAGA-GCUCCGcCAUGa -3'
miRNA:   3'- -GGCUAGagUUGUCUcCGGGGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 52397 0.67 0.974025
Target:  5'- uCCG-UCUCGAUgauGAuGGCCCCcGCGUa -3'
miRNA:   3'- -GGCuAGAGUUGu--CU-CCGGGGuUGUAc -5'
28900 3' -52.3 NC_006146.1 + 151056 0.66 0.983212
Target:  5'- aCGAUCUCcacGCuGAGGUCCCug-AUGa -3'
miRNA:   3'- gGCUAGAGu--UGuCUCCGGGGuugUAC- -5'
28900 3' -52.3 NC_006146.1 + 116371 0.73 0.809079
Target:  5'- -aGAUCUCAA-GGAGGUCCCugAGCGUGc -3'
miRNA:   3'- ggCUAGAGUUgUCUCCGGGG--UUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 45410 0.71 0.881751
Target:  5'- gUCGGUgggcCAGCGcGAGGCCCCGGCcgGg -3'
miRNA:   3'- -GGCUAga--GUUGU-CUCCGGGGUUGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.