miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 3' -52.3 NC_006146.1 + 128001 0.66 0.985066
Target:  5'- gCCGG----GACAGAcGGCCCUAGCGUc -3'
miRNA:   3'- -GGCUagagUUGUCU-CCGGGGUUGUAc -5'
28900 3' -52.3 NC_006146.1 + 101827 0.66 0.985066
Target:  5'- aCGAgUUCGGCGG-GGCCCgAGCGc- -3'
miRNA:   3'- gGCUaGAGUUGUCuCCGGGgUUGUac -5'
28900 3' -52.3 NC_006146.1 + 8899 0.66 0.98676
Target:  5'- gCCGGUCUCc-CAGGGuGCCuauCCAcCGUGg -3'
miRNA:   3'- -GGCUAGAGuuGUCUC-CGG---GGUuGUAC- -5'
28900 3' -52.3 NC_006146.1 + 5573 0.66 0.98676
Target:  5'- aUGAUUUCAACcgugcaauuccAGAGGCUCUAGCu-- -3'
miRNA:   3'- gGCUAGAGUUG-----------UCUCCGGGGUUGuac -5'
28900 3' -52.3 NC_006146.1 + 54311 0.66 0.988302
Target:  5'- aUGAUUUCAggcuGCAccuuGGCCCCuACGUGg -3'
miRNA:   3'- gGCUAGAGU----UGUcu--CCGGGGuUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 75486 0.67 0.978988
Target:  5'- aCGGggaCGGCGGGGGCCggcaagagcaCCAGCGUGa -3'
miRNA:   3'- gGCUagaGUUGUCUCCGG----------GGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 6449 0.68 0.96826
Target:  5'- -gGGUC-CAu--GGGGCCCCAACAa- -3'
miRNA:   3'- ggCUAGaGUuguCUCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 149610 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 155765 0.7 0.895544
Target:  5'- -aGGUCUCcgaAGGGGCCCUGAgAUGg -3'
miRNA:   3'- ggCUAGAGuugUCUCCGGGGUUgUAC- -5'
28900 3' -52.3 NC_006146.1 + 71353 0.7 0.895544
Target:  5'- cCCGAUCUCugcccCGGGGGCUCgGACu-- -3'
miRNA:   3'- -GGCUAGAGuu---GUCUCCGGGgUUGuac -5'
28900 3' -52.3 NC_006146.1 + 112687 0.7 0.914451
Target:  5'- gUCGGUCUCGAUcucgGGucuGGCCCgCAGCAg- -3'
miRNA:   3'- -GGCUAGAGUUG----UCu--CCGGG-GUUGUac -5'
28900 3' -52.3 NC_006146.1 + 50608 0.69 0.925837
Target:  5'- cCCGcAUCUUGAcCAGGGGCUCCgAGCAc- -3'
miRNA:   3'- -GGC-UAGAGUU-GUCUCCGGGG-UUGUac -5'
28900 3' -52.3 NC_006146.1 + 44491 0.69 0.934742
Target:  5'- gCC-AUCUCGuucgcggagagggcGCAGAGGCCCCug-GUGg -3'
miRNA:   3'- -GGcUAGAGU--------------UGUCUCCGGGGuugUAC- -5'
28900 3' -52.3 NC_006146.1 + 167886 0.69 0.941073
Target:  5'- gUGAgguugCUCcaggGAUGGAaaGGCCCCAGCAUGa -3'
miRNA:   3'- gGCUa----GAG----UUGUCU--CCGGGGUUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 55781 0.68 0.95412
Target:  5'- gCUGcgCaaCAACAGGGGCCUCuauAACAUGg -3'
miRNA:   3'- -GGCuaGa-GUUGUCUCCGGGG---UUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 6591 0.68 0.95412
Target:  5'- cCCGAcaacagcaaCGGCAGuGGCCCCGGCGg- -3'
miRNA:   3'- -GGCUaga------GUUGUCuCCGGGGUUGUac -5'
28900 3' -52.3 NC_006146.1 + 78127 0.68 0.95412
Target:  5'- cCUGAga--GGCAGAGGCCCCuuCAc- -3'
miRNA:   3'- -GGCUagagUUGUCUCCGGGGuuGUac -5'
28900 3' -52.3 NC_006146.1 + 72386 0.68 0.96164
Target:  5'- cCCGAg-UCGGguGGGGCCCCucCAUc -3'
miRNA:   3'- -GGCUagAGUUguCUCCGGGGuuGUAc -5'
28900 3' -52.3 NC_006146.1 + 114122 0.68 0.96506
Target:  5'- gCCGcgCUCAccgaGGAGGCCUgcGCGUGc -3'
miRNA:   3'- -GGCuaGAGUug--UCUCCGGGguUGUAC- -5'
28900 3' -52.3 NC_006146.1 + 61200 0.68 0.96506
Target:  5'- aCGGUCaUGGCGGAGcucuGCCCCGAUcgGg -3'
miRNA:   3'- gGCUAGaGUUGUCUC----CGGGGUUGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.